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Amino Acids: The Forum for Amino Acid, Peptide and Protein Research (v.38, #5)

Plasma levels and urinary excretion of amino acids by subjects with renal calculi by Stoyanka Slavcheva Atanassova; P. Panchev; M. Ivanova (pp. 1277-1282).

Plasma levels and urinary amino acid excretions were estimated by high-performance liquid chromatography in 15 control subjects and 36 stone formers (SFs) classified according to the stone type: (1) 22 cases with calcium oxalate stones; (2) four cases with pure uric acid stones; (3) 10 cases with magnesium-ammonium phosphate stones, either pure or mixed with apatite. Some types of stones (namely oxalate and uric acid calculi) are mainly formed as a result of a metabolic deficiency that may affect the amino acid metabolism, and thus may be reflected in the urinary amino acid pattern. Data demonstrated clearly that there is a general tendency towards decreased amino acid excretions in all SFs with all types of stones. As a whole, one can observe a higher percentage of patients with calcium oxalate and phosphate calculosis, who have low urine excretions of amino acids; about 50% are the SFs with lower urine excretion of serine, glycine, taurine and i-leucine; the high percentage of patients with CaOX calculi shows lower urine excretions of tyrosine and ornithine.

Keywords: Amino acids; Urolithiasis; Renal calculi; Plasma levels; Urine excretion

Induction of type I interferon by RNA viruses: cellular receptors and their substrates by Alina Baum; Adolfo García-Sastre (pp. 1283-1299).

Virus recognition and induction of interferon (IFN) are critical components of the innate immune system. The Toll-like receptor (TLR) and RIG-I-like receptor families have been characterized as key players in RNA virus detection. Signaling cascades initiated by these receptors are crucial for establishment of an IFN signaling mediated antiviral state in infected and neighboring cells and containment of virus replication as well as initiation of the adaptive immune response. In this review, we focus on the diverse and overlapping functions of these receptors, their physiological importance, and respective viral inducers. We highlight the roles of TRL3, TLR7/8, retinoic acid inducible gene I, melanoma differentiation-associated gene 5, and the RNA molecules responsible for activating these viral sensors.

Keywords: RIG-I; MDA5; LGP2; TLR; RNA virus

Induction of type I interferon by RNA viruses: cellular receptors and their substrates by Alina Baum; Adolfo García-Sastre (pp. 1283-1299).

Keywords: RIG-I; MDA5; LGP2; TLR; RNA virus

Synthesis of novel MMT/acyl-protected nucleo alanine monomers for the preparation of DNA/alanyl-PNA chimeras by G. N. Roviello; S. Gröschel; C. Pedone; U. Diederichsen (pp. 1301-1309).

Alanyl-peptide nucleic acid (alanyl-PNA)/DNA chimeras are oligomers envisaged to be beneficial in efficient DNA diagnostics based on an improved molecular beacon concept. A synthesis of alanyl-PNA/DNA chimera can be based on the solid phase assembly of the oligomer with mixed oligonucleotide/peptide backbone under DNA synthesis conditions, in which the nucleotides are introduced as phosphoramidites, whereas the nucleo amino acids make use of the acid labile monomethoxytrityl (MMT) group for temporary protection of the α-amino groups and acyl protecting groups for the exocyclic amino functions of the nucleobases. In this work, we realized for the first time the synthesis of all four MMT/acyl-protected nucleo alanines, achieved by deprotection/reprotection of the newly synthesized Boc/acyl intermediates, useful monomers for the obtainment of (alanyl-PNA)/DNA chimeras by conditions fully compatible with the standard phosphoramidite DNA synthesis strategy.

Keywords: Amino acids; DNA recognition; Molecular beacon; Protecting groups

Erratum to: Synthesis of novel MMT/acyl-protected nucleo alanine monomers for the preparation of DNA/alanyl-PNA chimeras by G. N. Roviello; S. Gröschel; C. Pedone; U. Diederichsen (pp. 1311-1312).

In vivo biosynthesis of an Ala-scan library based on the cyclic peptide SFTI-1 by Jeffrey Austin; Richard H. Kimura; Youn-Hi Woo; Julio A. Camarero (pp. 1313-1322).

We present the in vivo biosynthesis of wild-type sunflower trypsin inhibitor 1 (SFTI-1) inside E. coli cells using an intramolecular native chemical ligation in combination with a modified protein splicing unit. SFTI-1 is a small backbone cyclized polypeptide with a single disulfide bridge. A small library containing multiple Ala mutants was also biosynthesized and its activity was assayed using a trypsin-binding assay. This study clearly demonstrates the exciting possibility of generating large cyclic peptide libraries in live E. coli cells, and is a critical first step for developing in vivo screening and directed evolution technologies using the cyclic peptide SFTI-1 as a molecular scaffold.

Keywords: Bowman–Birk inhibitor; Trypsin inhibitor; Backbone cyclized peptides; Genetically encoded libraries; Protein splicing

Oral supplementation with l-aspartate and l-glutamate inhibits atherogenesis and fatty liver disease in cholesterol-fed rabbit by Amalia E. Yanni; George Agrogiannis; Tzortzis Nomikos; Elisabeth Fragopoulou; Alkisti Pantopoulou; Smaragdi Antonopoulou; Despoina Perrea (pp. 1323-1331).

Previous studies have shown that dietary supplementation with l-aspartate and l-glutamate inhibits fatty streak initiation in cholesterol-fed rabbit. The present study investigates the role of dicarboxylic amino acids on the progression of fatty streaks and the development of fatty liver disease, which were caused in New Zealand White rabbits after a 0.5% w/w cholesterol diet for 7 weeks. A group of animals additionally received a combination of 12.5 mM l-aspartate and 12.5 mM l-glutamate per day through drinking water. Total cholesterol (TC), high-density lipoproteins cholesterol (HDLC), non-HDLC and triacylglycerol (TAG) concentrations were measured in plasma. Serum gamma-glutamyl transferase (γ-GT), aspartate aminotransferase (AST) and alanine aminotransferase (ALT) activities were also determined. At the end of dietary intervention, animals were sacrificed. Aortic, hepatic and brain lesions were evaluated after staining with hematoxylin and eosin. Supplementation with dicarboxylic amino acids inhibited the progression of aortic intima thickness (P < 0.05) and the development of liver lesions (P < 0.05). TC, non-HDLC and TAG were similarly increased in both cholesterol-fed groups. Serum γ-GT and AST activities elevated during the study in all cholesterol-fed animals but the elevation of γ-GT was milder and significantly lower in rabbits treated with l-aspartate and l-glutamate (P < 0.05). ALT activity was not affected by cholesterol feeding. In conclusion, oral supplementation with l-aspartate and l-glutamate inhibits the progression of atherogenesis and the development of fatty liver disease in the animal model of cholesterol-fed rabbit. The beneficial effects of dicarboxylic amino acids reflect the limited elevation of serum γ-GT activity.

Keywords: Aspartate; Glutamate; Atherogenesis; Fatty liver disease; Gamma-glutamyl transferase

Shotgun proteomic analysis of the fat body during metamorphosis of domesticated silkworm (Bombyx mori) by Huijuan Yang; Zhonghua Zhou; Huarong Zhang; Ming Chen; Jianying Li; Yingying Ma; Boxiong Zhong (pp. 1333-1342).

Protein expression profiles in the fat bodies of larval, pupal, and moth stages of silkworm were determined using shotgun proteomics and MS sequencing. We identified 138, 217, and 86 proteins from the larval, pupal and moth stages, respectively, of which 12 were shared by the 3 stages. There were 92, 150, and 45 specific proteins identified in the larval, pupal and moth stages, respectively, of which 17, 68, and 9 had functional annotations. Among the specific proteins identified in moth fat body, sex-specific storage-protein 1 precursor and chorion protein B8 were unique to the moth stage, indicating that the moth stage fat body is more important for adult sexual characteristics. Many ribosomal proteins (L23, L4, L5, P2, S10, S11, S15A and S3) were found in pupal fat bodies, whereas only three (L14, S20, and S7) and none were identified in larval and moth fat bodies, respectively. Twenty-three metabolic enzymes were identified in the pupal stage, while only four and two were identified in the larval and moth stages, respectively. In addition, an important protein, gloverin2, was only identified in larval fat bodies. Gene ontology (GO) analysis of the proteins specific to the three stages linked them to the cellular component, molecular function, and biological process categories. The most diverse GO functional classes were involved by the relatively less specific proteins identified in larva. GO analysis of the proteins shared among the three stages showed that the pupa and moth stages shared the most similar protein functions in the fat body.

Keywords: Fat body; Silkworm; Shotgun; Proteome; Metamorphosis

Aqueous-phase quantitative NMR determination of amino acid enantiomer ratio by ¹³C-NMR using chiral neodymium shift reagent by Nicola Florini; Francesco Faglioni; Claudia Zucchi; Luciano Caglioti; Gyula Pályi (pp. 1343-1350).

A neodymium-(S)-PDTA (PDTA = N,N,N′,N′-tetrakis[(hydroxycarbonyl)methyl]-1,2-diaminopropane) complex was found exceptionally useful in the quantitative determination of enantiomer ratios of water-soluble natural amino acids by ¹³C-NMR. The method is demonstrated on mixtures of l- and d-enantiomers of various amino acids. The interactions of the chiral shift reagent with the amino acid molecules were rationalized by molecular orbital calculations.

Keywords: Analysis of amino acids; ¹³C-NMR shift reagent; Neodymium complex chiral shift reagent; Water-soluble chiral shift reagent

Plasma catecholamine and nephrine responses following 7 weeks of sprint cycle training by Richard Michael Bracken; Stephen Brooks (pp. 1351-1359).

The catecholamine metabolites normetanephrine (NMET) and metanephrine (MET) increase in response to acute exercise. However, changes in catecholamine ‘nephrines’ during sprint training are unclear. Therefore, the aim of this study was to examine the plasma nephrine and catecholamine (noradrenaline, NA; adrenaline, AD) responses to a laboratory-based cycle test before and after a 7-week period of cycle sprint training. Ten healthy men completed a 2-min cycle test at a power output equivalent to 110% of pre-training VO₂max before and after 7 weeks of laboratory based sprint cycle training, three times per week. Resting and post-sprint venous blood samples were taken. Resting plasma nephrines and catecholamines increased significantly following exercise (P < 0.05). Post-exercise NA and NMET were reduced after training (P < 0.05) and a trend for a reduction in AD (P = 0.09) and MET (P = 0.07) was observed. The results demonstrate a reduction in exercise-induced increases in plasma nephrine concentrations following sprint training. This suggests catechol-O-methyl transferase activity is coupled to high intensity cycle exercise. These findings may aid in the understanding of catecholamine regulation during high intensity exercise and sprint training.

Keywords: Metanephrine; Normetanephrine; Maximal exercise; Catecholamines; Training

Tryptophan and iodothyronine transport interactions in HepG2 human hepatoma cells by James W. A. Ritchie; Peter Maving Taylor (pp. 1361-1367).

This study identifies interactions between transport of the aromatic amino acid l-tryptophan (Trp) and thyroid hormones (TH) in HepG2 human hepatoma cells. The major portion of Trp uptake in HepG2 cells occurs via the NEM-sensitive amino acid transport System L2 (consistent with hepatic LAT3 expression), with a smaller aromatic-AA selective System T (MCT10) component. LAT3 and MCT10 mRNA were both detected in HepG2 cells. Uptake of TH does not involve System L2, but a significant portion of T₃ uptake is mediated by System T, alongside a taurocholate-sensitive organic anion transporter. T₄ uptake into HepG2 cells appears to be mediated principally by organic anion/monocarboxylate transporters, with smaller contributions by System T and receptor-mediated endocytosis. TH–Trp transport interactions in liver cells centre on System T which, due to a perivenous localisation alongside deiodinase 1, may impact on hepatic T₃ generation and release.

Keywords: Thyroid hormone; Liver; Aromatic amino acid; Biomembrane transport

Microwave irradiation as a versatile tool for increasing reaction rates and yields in synthesis of optically active polyamides containing flexible l-leucine amino acid by Shadpour Mallakpour; Amin Zadehnazari (pp. 1369-1376).

In this investigation, a series of thermally stable and optically active polyamides (PA)s containing bulky pendant chiral functionality from polymerization of a diacid monomer containing rigid phthalimide and flexible l-leucine groups, (2S)-5-[4-(4-methyl-2-phthalimidylpentanoylamino)benzoylamino]isophthalic acid with several aromatic and aliphatic diisocyanates such as 4,4′-methylenebis(phenyl isocyanate), toluylene-2,4-diisocyanate, isophorone diisocyanate, and hexamethylene diisocyanate under gradual heating method were prepared and compared with microwave-assisted polycondensation method. The polymerization reactions occurred rapidly under microwave irradiation and produced a series of PAs with good yields and moderate inherent viscosities of 0.26–0.68 dL/g. All of the new PAs showed good solubility and were readily dissolved in aprotic organic solvents. The resulting polymers were characterized by FT-IR, ¹H NMR spectroscopy, and elemental analysis technique. Thermal stability and thermal properties of PAs were evaluated by thermogravimetric analysis and differential scanning calorimetry. The interpretation of kinetic parameters (E, ∆H, ∆S, and ∆G) of thermal decomposition stages have been evaluated using Coats–Redfern equations.

Keywords: Thermally stable polyamides; Microwave-assisted polycondensation; Green chemistry; l-leucine

Detection of d-amino acids in purified proteins synthesized in Escherichia coli by Tetsuya Miyamoto; Masae Sekine; Tetsuhiro Ogawa; Makoto Hidaka; Hiroshi Homma; Haruhiko Masaki (pp. 1377-1385).

It has long been believed that amino acids comprising proteins of all living organisms are only of the l-configuration, except for Gly. However, peptidyl d-amino acids were observed in hydrolysates of soluble high molecular weight fractions extracted from cells or tissues of various organisms. This strongly suggests that significant amounts of d-amino acids are naturally present in usual proteins. Thus we analyzed the d-amino acid contents of His-tag-purified β-galactosidase and human urocortin, which were synthesized by Escherichia coli grown in controlled synthetic media. After acidic hydrolysis for various times at 110°C, samples were derivatized with 4-fluoro-7-nitro-2, 1, 3-benzoxadiazole (NBD-F) and separated on a reverse-phase column followed by a chiral column into d- and l-enantiomers. The contents of d-enantiomers of Ala, Leu, Phe, Val, Asp, and Glu were determined by plotting index d/(d + l) against the incubation time for hydrolysis and extrapolating the linear regression line to 0 h to eliminate the effect of racemization of amino acids during the incubation. Significant contents of d-amino acids were reproducibly detected, the d-amino acid profile being specific to an individual protein. This finding indicated the likelihood that d-amino acids are in fact present in the purified proteins. On the other hand, the d-amino acid contents of proteins were hardly influenced by the addition of d- or l-amino acids to the cultivation medium, whereas intracellular free d-amino acids sensitively varied according to the extracellular conditions. The origin of these d-amino acids detected in proteins was discussed.

Keywords: d-amino acid; Chirality; Escherichia coli ; β-galactosidase; Urocortin; Acidic hydrolysis

Adenosine receptor agonists affect taurine release from mouse brain stem slices in ischemia by Pirjo Saransaari; Simo S. Oja (pp. 1387-1393).

The release of the inhibitory amino acid taurine is markedly enhanced under ischemic conditions in both adult and developing brain stem, together with a pronounced increase in the release of the neuromodulator adenosine. We now studied the effects of adenosine receptor agonists and antagonists on [³H]taurine release in the brain stem in normoxia and ischemia, using a superfusion system. Under standard conditions, the adenosine A₁ receptor agonist N⁶-cyclohexyladenosine (CHA) potentiated basal taurine release in adult mice, which response was blocked by the antagonist 8-cyclopentyl-1,3-dipropylxanthine (DPCPX). CHA and the A_2a receptor agonist 2-p-(2-carboxyethyl)phenylamino-5′-N-ethylcarboxaminoadenosinehydrochloride (CGS 21680) had no effect on the release in developing mice. In ischemia, CHA depressed both basal and K⁺-stimulated taurine release in developing mice in a receptor-mediated manner, blocked by DPCPX. The A_2a receptor agonist CGS 21680 was also inhibitory. Taurine and adenosine may thus not cooperate in developing mice to prevent ischemic neuronal damage. On the other hand, CGS 21680 enhanced taurine release in the adult brain stem in ischemia, both basal and K⁺-stimulated release being affected. These effects were abolished by the antagonist 3,7-dimethyl-1-propargylxanthine (DMPX), indicating a receptor-mediated process. In this case elevated levels of taurine could be beneficial, protecting against hyperexcitation and excitotoxicity.

Keywords: Taurine release; Adenosine receptors; Ischemia; Brain stem slices; Development; Mouse

Chemiluminescence from thermal oxidation of amino acids and proteins by Keith R. Millington; Hiroshi Ishii; George Maurdev (pp. 1395-1405).

Chemiluminescence (CL) with maximum emission in the range 550–650 nm is observed when proteins and certain amino acids are heated in air, and CL intensity is significantly reduced in nitrogen. Of the 20 common amino acids, lysine (Lys) has the highest thermal CL intensity by a factor of ~30 over arginine, threonine and asparagine. This finding differs from previous studies on amino acids and proteins oxidised using free radical initiators or singlet oxygen, where tryptophan was the dominant factor for CL emission. CL from heating solid Lys in air is accompanied by browning and the generation of fluorescent products which are characteristic of advanced glycosylation end products (AGEs) in thermally treated milk proteins. During thermal oxidation, Lys may react with its own carbonyl oxidation products to form fluorescent compounds similar to AGEs via the formation of Schiff bases. The mechanism of thermal oxidation of proteins may be similar to polyamide polymers, where reaction of free primary amino groups with carbonyls to form Schiff bases plays a key role.

Keywords: Chemiluminescence; Protein; Amino acid; Schiff base; Maillard reaction; Polyamide

Urocortin 1 administered into the hypothalamic supraoptic nucleus affects open-field behaviour in rats by Ambrin Fatima; M. Fahad Haroon; Gerald Wolf; Mario Engelmann; Mariarosa G. Spina (pp. 1407-1414).

The presence of both Urocortin 1 (Ucn1) and corticotropin-releasing factor 2 receptors (CRF₂R) in the hypothalamic supraoptic nucleus (SON) suggests that endogenous Ucn1 released within this brain area acts as a local signal that might be involved in the regulation of not only endocrine but also behavioural stress responses. To test this hypothesis, we monitored the effects induced by the administration of a range of doses of synthetic Ucn1 (0.001–1.0 μg) bilaterally into the SON of rats in the open field test (OFT). Ucn1 administration produced an inverted U-shaped dose–response curve on OFT behaviour, in particular the dose of 0.01 μg of Ucn1 significantly increased the number of rearing and grooming episodes without affecting locomotion. In addition, this dosage augmented also the latency to visit the centre of the open field. Pre-treatment with the CRF₂R antagonist, astressin-2B (0.1 μg) normalized Ucn1 treatment-induced effects. These results suggest that Ucn1 released within the SON area interacts with CRF₂R to control the state of arousal.

Keywords: Urocortin 1; Corticotropin-releasing factor 2 receptor; Astressin-2B; Anxiety-like behaviour; Grooming behaviour

Imaging of human glioma cells by means of a Syndecan-4 directed DOTA-conjugate by Alexander Sturzu; Hubert Kalbacher; Hartmut Echner; Uwe Klose; Alireza Gharabaghi; Stefan Heckl (pp. 1415-1421).

The extracellular glycoprotein Tenascin-C (TN-C) is highly upregulated in gliomas. Therefore, many chemotherapies with radiolabeled antibodies against TN-C have been performed. However, TN-Cs binding partner Syndecan-4 did not play any role as a therapeutic or imaging target in gliomas. We constructed an imaging compound containing the magnetic resonance imaging (MRI) contrast agent gadolinium (Gd)-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA), the fluorescence dye sulforhodamine and a synthetic Syndecan-4-specific 21 amino acid peptide derived from TN-C. Magnetic resonance relaxometry, confocal laser scanning microscopy, and flow cytometry showed that the Syndecan-4-DOTA-Rhodamine conjugate was taken up into the cytoplasm of human U373 glioma cells without any cytotoxic effects. Competition experiments indicate that this uptake was receptor-mediated. This conjugate might be used for future MRI studies of brain tumors after systemic or intraoperative local application.

Keywords: Syndecan-4; U373 glioma cells; Tenascin-C; DOTA

In vitro heat shock of human monocytes results in a proportional increase of inducible Hsp70 expression according to the basal content by Rebecca V. Vince; Katherine Oliver; Adrian W. Midgley; Lars R. McNaughton; Leigh A. Madden (pp. 1423-1428).

Heat shock proteins play an important role as molecular chaperones of the cell. Inducible heat shock protein 70 is rapidly synthesised in response to numerous stressors and monocytes are sensitive to changes in core temperature resulting in a circadian variation of Hsp70 expression. Monocytes were isolated via density centrifugation from nine healthy male volunteers at 5 am, 1 pm and 9 pm, representing the nadir (5 am), peak (9 pm) and intermediate (1 pm) of Hsp70 expression in the 24-h cycle. Analysis of freshly isolated monocytes for Hsp70 expression confirmed Hsp70 levels at the three selected time points. Monocytes were subjected to in vitro heat shock at 40°C (±0.1) for 90 min with a 90 min 37°C (±0.1) exposure acting as a control. A significant increase in Hsp70 was observed at 5 am (p < 0.001) and 1 pm (p = 0.028) at 40°C when compared to 37°C but not at 9 pm (p = 0.19). A significant increase was also observed from the basal levels of Hsp70, measured on freshly isolated monocytes and the levels detected after heat shock at 40°C at 5 am (p < 0.001) and 1 pm (p = 0.001), which was not observed at 9 pm (p = 0.15). Furthermore, a significant correlation was observed in the heat shock response at 40°C and that obtained at 37°C (p < 0.001). In conclusion, the heat shock response in monocytes is directly proportional to the amount of Hsp70 present in the cells and the stress response may be much higher at different times of the day.

Keywords: Heat shock; Stress response; Hsp70; Monocytes; Diurnal variation

Effects of zinc ex vivo and intracellular zinc chelator in vivo on taurine uptake in goldfish retina by S. Nusetti; M. Urbina; F. Obregón; M. Quintal; Z. Benzo; L. Lima (pp. 1429-1437).

Taurine and zinc exert neurotrophic effects. Zinc modulates Na⁺/Cl⁻-dependent transporters. This study examined the effect of zinc (ZnSO₄) ex vivo and zinc chelator N,N,N′,N′-tetrakis-(2-pyridylmethyl) ethylenediamine (TPEN) in vivo on [³H]taurine transport in goldfish retina. The effect of TPEN in vivo on taurine and zinc levels was determined. Isolated cells were incubated in Ringer with zinc (0.1–100 μM). Taurine transport was done with taurine (0.001–1 mM) and 50 nM [³H]taurine. Zinc (100 μM) noncompetitively inhibited taurine transport. TPEN was administered intraocularly and retinas extracted 3, 5 and 10 days later. Taurine was determined by HPLC (nmol/mg protein) and zinc by spectrophotometry ICP (mg/mg protein). Taurine and zinc levels decreased at 3 days and increased at 10 days after TPEN administration. At 10 days after intraocular TPEN, taurine transport affinity increased (K _s = 0.018 ± 0.006 vs. 0.028 ± 0.008 mM). Apparently, zinc deficiency affects the taurine–zinc complex and taurine availability. The increased taurine uptake affinity by TPEN was possibly associated with a response to maximize retinal taurine content at low zinc concentration.

Keywords: Retina; Taurine; Taurine transporter; Zinc

Medium optimization for production of gamma-aminobutyric acid by Lactobacillus brevis NCL912 by Haixing Li; Ting Qiu; Dandan Gao; Yusheng Cao (pp. 1439-1445).

Production of gamma-aminobutyric acid (GABA) was carried out in Erlenmeyer flasks by Lactobacillus brevis NCL912. Traditional methods were first adopted to select the key factors that impact the GABA production to preliminarily determine the suitable concentration ranges of the key factors. It was found that glucose, soya peptone, Tween-80 and MnSO₄·4H₂O were the key factors affecting GABA production. Then, response surface methodology was applied to analyze the optimum contents of the four key factors in the medium, and the production of GABA was predicted as 349.69 mM under the optimized conditions with this model. Afterward, the experiment was performed under the optimized conditions, and the yield of GABA reached 345.83 mM, which was 130% higher than the initial medium. The results showed that experimental yield and predicted values of GABA yield were in good agreement.

Keywords: Gamma-aminobutyric acid; Lactobacillus brevis NCL912; Medium optimization; Response surface methodology

Synthesis of the siderophore pyoverdine in Pseudomonas aeruginosa involves a periplasmic maturation by Emilie Yeterian; Lois W. Martin; Laurent Guillon; Laure Journet; Iain L. Lamont; Isabelle J. Schalk (pp. 1447-1459).

Pyoverdines, the main siderophores produced by fluorescent Pseudomonads, comprise a fluorescent dihydroxyquinoline chromophore attached to a strain-specific peptide. These molecules are thought to be synthesized as non-fluorescent precursor peptides that are then modified to give functional pyoverdines. Using the fluorescent properties of PVDI, the pyoverdine produced by Pseudomonas aeruginosa PAO1, we were able to show that PVDI was not present in the cytoplasm of the bacteria, but large amounts of a fluorescent PVDI precursor PVDIp were stored in the periplasm. Like PVDI, PVDIp is able to transport iron into P. aeruginosa cells. Mutation of genes encoding the periplasmic PvdN, PvdO and PvdP proteins prevented accumulation of PVDIp in the periplasm and secretion of PVDI into the growth medium, indicating that these three enzymes are involved in PVDI synthesis. Mutation of the gene encoding PvdQ resulted in the presence of fluorescent PVDI precursor in the periplasm and secretion of a functional fluorescent siderophore that had different isoelectric properties to PVDI, suggesting a role for PvdQ in the periplasmic maturation of PVDI. Mutation of the gene encoding the export ABC transporter PvdE prevented PVDI production and accumulation of PVDIp in the periplasm. These data are consistent with a model in which a PVDI precursor peptide is synthesized in the cytoplasm and exported to the periplasm by PvdE where siderophore maturation, including formation of the chromophore moiety, occurs in a process involving the PvdN, PvdO, PvdP and PvdQ proteins.

Keywords: Siderophore biosynthesis; Pyoverdine; Iron uptake; Fluorescence; Fluorescent peptide; Pseudomonas aeruginosa

Regulation of redox forms of plasma thiols by albumin in multiple sclerosis after fasting and methionine loading test by Danila Di Giuseppe; Monica Ulivelli; Sabina Bartalini; Stefania Battistini; Alfonso Cerase; Stefano Passero; Domenico Summa; Simona Frosali; Raffaella Priora; Antonios Margaritis; Paolo Di Simplicio (pp. 1461-1471).

Increases in plasma concentrations of total homocysteine (tHcy) have recently been reported in multiple sclerosis (MS) as the alteration of the methionine cycle for the onset of autoimmune diseases. Homocysteine (Hcy) and cysteine (Cys) are generated by the methionine cycle and transsulfuration reactions. Their plasma levels are subjected to complex redox changes by oxidation and thiol/disulfide (SH/SS) exchange reactions regulated by albumin. The methionine loading test (MLT) is a useful in vivo test to assay the functionality of the methionine cycle and transsulfuration reactions. Time courses of redox species of Cys, cysteinylglycine (CGly), Hcy, and glutathione have been investigated in plasma of MS patients versus healthy subjects after an overnight fasting, and 2, 4, and 6 h after an oral MLT (100 mg/kg body weight), to detect possible dysfunctions of the methionine cycle, transsulfuration reactions and alterations in plasma distribution of redox species. After fasting, the MS group showed a significant increase in cysteine-protein mixed disulfides (bCys) and total Cys (tCys). While plasma bCys and tCys in MS group remained elevated after methionine administration when compared to control, cystine (oxCys) increased significantly with respect to control. Although increased plasma concentrations of bCys and tCys at fasting might reflect an enhance of transsulfuration reactions in MS patients, this was not confirmed by the analysis of redox changes of thiols and total thiols after MLT. This study has also demonstrated that albumin-dependent SH/SS exchange reactions are a potent regulation system of thiol redox species in plasma.

Keywords: Multiple sclerosis; Methionine loading test; Plasma thiols; Homocysteine; Cysteine

Changes in plasma amino acid concentrations with increasing age in patients with propionic acidemia by Sabine Scholl-Bürgi; Jörn Oliver Sass; Peter Heinz-Erian; Edda Amann; Edda Haberlandt; Ursula Albrecht; Claudia Ertl; Sara Baumgartner Sigl; Florian Lagler; Kevin Rostasy; Daniela Karall (pp. 1473-1481).

The objective of the study is to analyze plasma amino acid concentrations in propionic acidemia (PA) for the purpose of elucidating possible correlations between propionyl-CoA carboxylase deficiency and distinct amino acid behavior. Plasma concentrations of 19 amino acids were measured in 240 random samples from 11 patients (6 families) with enzymatically and/or genetically proven propionic acidemia (sampling period, January 2001–December 2007). They were compared with reference values from the literature and correlated with age using the Pearson correlation coefficient test. Decreased plasma concentrations were observed for glutamine, histidine, threonine, valine, isoleucine, leucine, phenylalanine and arginine. Levels of glycine, alanine and aspartate were elevated, while values of serine, asparagine, ornithine and glutamate were normal. For lysine, proline and methionine a clear association was not possible. Significant correlations with age were observed for 13 amino acids (positive correlation: asparagine, glutamine, proline, alanine, histidine, threonine, methionine, arginine; negative correlation: leucine, phenylalanine, ornithine, glutamate and aspartate). This study gives new insight over long-term changes in plasma amino acid concentrations and may provide options for future therapies (e.g., substitution of anaplerotic substances) in PA patients.

Keywords: Amino acid concentrations; Propionic acidemia; Anaplerosis

Daily quadratic trend in basal monocyte expressed HSP72 in healthy human subjects by Lee Taylor; Adrian W. Midgley; Bryna Chrismas; Leigh A. Madden; Rebecca V. Vince; Lars R. McNaughton (pp. 1483-1488).

The inducible human stress protein heat shock protein 72 (HSP72) performs vital roles within the body at rest and during periods of stress. Recently it was shown over a 24 h period that basal HSP72 followed a diurnal variation. However, these results and previous literature demonstrate noticeable inter-subject variation in basal HSP72 expression. The notion of intra/inter-day variation in basal HSP72 expression has not been explored in detail. Basal monocyte expressed HSP72 was determined every 3 h, over a 9 h period in 12 healthy male subjects (20.2 ± 1.9 years, 178.7 ± 5.6 cm, 75.1 ± 6.0 kg) within a temperature controlled laboratory. A significant quadratic trend was observed for time (F = 26.0, P = 0.001, partial η² = 0.74), where HSP72 decreased between 0800 and 1100 hours (P < 0.001) and then increased between 1100 and 1400 hours (P = 0.015). The main effect for day (F = 2.6, P = 0.14) and the day × time interaction effect (F = 3.9, P = 0.08) were not significant. There was no correlation between serum and monocyte expressed HSP72, with no significant effect for time (F = 2.0, P = 0.21) in serum HSP72 expression. The results support findings by others that basal monocyte expressed HSP72 follows a diurnal variation which incorporates a quadratic trend, which is not compromised by any significant daily variation and that serum HSP72 expression has no endogenous circadian rhythm. The significant quadratic trend in basal monocyte HSP72 expression shown here highlights the need to tightly control variables, such as timing of sample collection, as it is known basal values influence the magnitude of HSP72 expression post-stressor/intervention.

Keywords: HSP70; HSP72; Daily variation; Methods

Synthesis, spectroscopic studies and biological activity of a novel nucleopeptide with Moloney murine leukemia virus reverse transcriptase inhibitory activity by Giovanni N. Roviello; Sonia Di Gaetano; Domenica Capasso; Annalisa Cesarani; Enrico M. Bucci; Carlo Pedone (pp. 1489-1496).

In this work, we report the synthesis of an alternate nucleo-alpha,epsilon-peptide based on l-lysine moieties, an in vitro study of its biological activity, and spectroscopical binding studies between the novel nucleopeptide and Moloney murine leukemia virus reverse transcriptase as well as RNA. An alternate homothymine hexamer was synthesized by a straightforward solid phase route starting from commercial materials, purified by RP-HPLC and characterized by ESI-MS. The efficiency of the novel nucleo-alpha,epsilon-peptide in interfering with the reverse transcription of eukaryotic mRNA and the noteworthy enzymatic resistance demonstrated by specific assays are in favor of the employment of this nucleopeptide in novel biomedical strategies.

Keywords: PNA; RNA; Reverse transcriptase; Virus

Using auto covariance method for functional discrimination of membrane proteins based on evolution information by Li Yang; Yizhou Li; Rongquan Xiao; Yuhong Zeng; Jiamin Xiao; Fuyuan Tan; Menglong Li (pp. 1497-1503).

Membrane transporters are critical in living cells. Therefore, the discrimination of the types of membrane proteins based on their functions is of great importance both for helping genome annotation and providing a supplementary role to experimental researchers to gain insight into membrane proteins’ function. There are a lot of computational methods to facilitate the identification of the functional types of membrane proteins. However, in these methods, the local sequence environment was not integrated into the constructed model. In this study, we described a new strategy to predict the functional types of membrane proteins using a model based on auto covariance and position-specific scoring matrix. The novelty of the presented approach is considering the distribution of different positions of functional conservation sites in protein sequences. Thereby, this model adequately takes into account the long-range correlation between such sites during sequential evolution. Fivefold cross-validation test shows that this method greatly improves the prediction accuracy and achieves an acceptable prediction accuracy of 87.51%. The result indicates that the current approach might be an effective tool for predicting the functional types of membrane proteins only using the primary sequences. The code and dataset used in this article are freely available at http://cic.scu.edu.cn/bioinformatics/predict_membrane.zip .

Keywords: Membrane transporters; Sequence environment; Position-specific scoring matrix; Auto covariance; Support vector machine

Icaritin induces growth inhibition and apoptosis of human prostatic smooth muscle cells in an estrogen receptor-independent manner by Min-Feng Chen; Lin Qi; Yuan Li; Xiong-Bing Zu; Yuan-Qin Dai; Peng Zhang (pp. 1505-1513).

Icaritin has selective estrogen receptor (ER) modulating activity. ERs are expressed in the prostate stroma, and estrogens have an important role in the pathology of benign prostatic hyperplasia (BPH). However, the impact of icaritin on BPH was not studied. Human prostatic smooth muscle cells (PSMCs) were treated with 0–100 μM icaritin, also using 10 μM ICI182780 as a specific ER antagonist. The effects on cell growth and apoptosis were determined by cell counting and sandwich-enzyme-immunoassay. Western blotting was employed to illustrate the possible mechanisms. Cell growth was strongly inhibited by icaritin, and this was accompanied by an augmented apoptosis. Few changes in icaritin-induced growth inhibition and apoptosis were observed after pretreatment in the presence of ICI182780. Consistent with growth inhibition and apoptosis induction, icaritin decreased cyclin D1 and CDK4 expression and increased Bax/Bcl-2 ratio in human PSMCs. Furthermore, icaritin induced sustained phosphorylation of extracellular signal-regulated kinase (ERK) in human PSMCs. PD98059, a specific ERK inhibitor, blocked the activation of ERK by icaritin and abolished the icaritin-induced growth inhibition and apoptosis. The results indicate that icaritin reduces growth and induces apoptosis in human PSMCs via ERK signaling pathway without involvement of ERs.

Keywords: Icaritin; Growth; Apoptosis; Extracellular signal-regulated kinase; Prostatic smooth muscle cell

Chronic hyperhomocysteinemia impairs vascular function in ovariectomized rat carotid arteries by Andréa Carla Celotto; Sandra Y. Fukada; Francisco R. M. Laurindo; Renato Haddad; Marcos N. Eberlin; Ana Maria de Oliveira (pp. 1515-1522).

Homocysteine is an independent risk factor for coronary heart disease, as well as for cerebrovascular and peripheral vascular diseases. The purpose of this study was to investigate the effects of hyperhomocysteinemia (HHcy) on vascular reactivity within carotid artery segments isolated from ovariectomized female rats. Treatment with dl-Hcy thiolactone (1 g/kg body weight per day) reduced the phenylephrine-induced contraction of denuded rings. However, the treatment did not alter KCl-induced contractions, or relaxations induced by sodium nitroprusside or acetylcholine. We report elevated expressions of iNOS, eNOS, and nitrotyrosine in homocysteine-treated rat artery sections. Moreover, the inhibition of NOS by l-NAME, 1,400 W, or l-NNA restored phenylephrine-induced vasoconstriction in carotid artery segments from Hcy-treated rats. In conclusion, our findings show that severe HHCy can promote an acute decrease in the endothelium-independent contractile responses of carotid arteries to adrenergic agonists. This effect was restored by nitric oxide synthase inhibitors, which further supports the involvement of nitric oxide in HHcy-derived vascular dysfunction.

Keywords: Homocysteine; Female rat; Carotid artery; Contraction

Free amino acid production during tomato fruit ripening: a focus on l-glutamate by Augusto Sorrequieta; Gisela Ferraro; Silvana B. Boggio; Estela M. Valle (pp. 1523-1532).

In tomato, free amino acids increase dramatically during fruit ripening and their abundance changed differentially. More evident is l-glutamate which gives the characteristic “umami” flavor. Glutamate is the principal free amino acid of ripe fruits of cultivated varieties. In this paper, we examined the capacity of tomato fruits to process endogenous as well as exogenous polypeptides during the ripening transition, in order to analyze their contribution to the free amino acid pool. In addition, the activity of some enzymes involved in glutamate metabolism such as γ-glutamyl transpeptidase (γ-GTase), glutamate dehydrogenase (GDH), α-ketoglutarate-dependent γ-aminobutyrate transaminase (GABA-T), alanine and aspartate aminotransferases was evaluated. Results showed that peptidases were very active in ripening fruits, and they were able to release free amino acids from endogenous proteins and glutamate from exogenously added glutamate-containing peptides. In addition, red fruit contained enough γ-GTase activity to sustain glutamate liberation from endogenous substrates such as glutathione. From all the glutamate metabolizing enzymes, GDH and GABA-T showed the higher increase in activities when the ripening process starts. In summary, tomato fruits increase free amino acid content during ripening, most probably due to the raise of different peptidase activities. However, glutamate level of ripe fruit seems to be mostly related to GDH and GABA-T activities that could contribute to increase l-glutamate level during the ripening transition.

Keywords: Micro-Tom; Polyglutamate; Protease; Solanum lycopersicum ; Glutamate synthesis

Distinct anabolic signalling responses to amino acids in C2C12 skeletal muscle cells by Philip J. Atherton; Ken Smith; Timothy Etheridge; Debbie Rankin; Michael J. Rennie (pp. 1533-1539).

The essential amino acids (EAA) activate anabolic signalling through mechanisms, which are unclear in detail but include increased signalling through the mammalian target of rapamycin complex 1 (mTORC1). Of all the EAA, the branched chain amino acid (BCAA) leucine has been suggested as the most potent in stimulating protein synthesis, although there have been no studies investigating the effects of each EAA on anabolic signalling pathways. We therefore undertook a systematic analysis of the effect of each EAA on mTORC1 signalling in C2C12 myotubes whereby cells were serum (4 h) and amino acid (1 h) starved before stimulation with 2 mM of each amino acid. Immunoblotting was used to detect phosphorylated forms of protein kinase B (Akt)/mTORC1 signalling enzymes. The phosphorylation of Akt was unchanged by incubation with EAA. Phosphorylation of mTOR and 4E binding protein-1 (4EBP1) were increased 1.67 ± 0.1-fold and 2.5 ± 0.1-fold, respectively, in response to leucine stimulation but not in response to any other EAA. The phosphorylation of ribosomal s6 kinase (p70S6K1) was increased by stimulation with all EAA with the exceptions of isoleucine and valine. However, the increase with leucine was significantly greater, 5.9 ± 0.3-fold compared to 1.6–2.0-fold for the non-BCAA EAA. This pattern of activation was identical in ribosomal protein s6 (RPS6) with the additional effect of leucine being 3.8 ± 0.3-fold versus 1.5–2.0-fold. Phosphorylation of eukaryotic initiation/elongation factors eIF2α and eEF2 were unaffected by EAA. We conclude that leucine is unique amongst the amino acids in its capacity to stimulate both mTOR and 4EBP1 phosphorylation and to enhance p70S6K1 signalling.

Keywords: Amino acids; Anabolic signalling; Skeletal muscle; mTOR; Protein synthesis

Enriching the viral–host interactomes with interactions mediated by SH3 domains by Martina Carducci; Luana Licata; Daniele Peluso; Luisa Castagnoli; Gianni Cesareni (pp. 1541-1547).

Protein–protein interactions play an essential role in the regulation of most cellular processes. The process of viral infection is no exception and many viral pathogenic strategies involve targeting and perturbing host–protein interactions. The characterization of the host protein subnetworks disturbed by invading viruses is a major goal of viral research and may contribute to reveal fundamental biological mechanisms and to identify new therapeutic strategies. To assist in this approach, we have developed a database, VirusMINT, which stores in a structured format most of the published interactions between viral and host proteome. Although SH3 are the most ubiquitous and abundant class of protein binding modules, VirusMINT contains only a few interactions mediated by this domain class. To overcome this limitation, we have applied the whole interactome scanning experiment approach to identify interactions between 15 human SH3 domains and viral proline-rich peptides of two oncogenic viruses, human papillomavirus type 16 and human adenovirus A type 12. This approach identifies 114 new potential interactions between the human SH3 domains and proline-rich regions of the two viral proteomes.

Keywords: Virus-host interaction; Src homology 3 domain (SH3); Human adenovirus; Human papilloma virus; Whole interactome scanning experiment (WISE)

Synthesis and biological activity of oxytocin analogues containing unnatural amino acids in position 9: structure activity study by Vassiliki Magafa; Lenka Borovičková; Jiřina Slaninová; Paul Cordopatis (pp. 1549-1559).

We report the solid phase synthesis and some pharmacological properties of 24 oxytocin (OT) analogues. Basic modifications at position 9 (introduction of l- or d-β-(2-thienyl)-alanine [L- or D-Thi], or l- or d-3-Pyridylalanine [l- or d-3-Pal]) were combined with d-tyrosine(OEthyl) [d-Tyr(Et)] or d-1-naphthylalanine [d-1-Nal] in position 2 and β-mercaptopropionic acid (Mpa) in position 1 modifications in altogether 14 analogues. Additionally, 8 analogues having α-aminoisobutyric acid [Aib] or d-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (d-Tic) or diethylglycine (Deg) in position 9 and d-Tyr(Et) or d-1-Nal or d-Tic in position 2 and Mpa or Pen (ββ-dimethylcysteine) in position 1 were prepared. Two of these analogues have one more modification in position 6, i.e. Pen. Furthermore, two analogues having Mpa in position 1 and d-Tyr(Et) or d-1-Nal in position 2 were prepared for comparison purposes. The analogues were tested for rat uterotonic activity in vitro, in the rat pressor assay and for binding affinity to human OT receptor. The analogue having the highest anti-oxytocic activity was [Mpa¹, d-Tyr(Et)², Deg⁹]OT (pA₂ = 8.68 ± 0.26); this analogue was also selective.

Keywords: Oxytocin antagonists; Position 9; Unnatural amino acids; Biological activity; Binding affinity

Evidence for the involvement of d-aspartic acid in learning and memory of rat by Enza Topo; Andrea Soricelli; Angela Di Maio; Enrico D’Aniello; Maria Maddalena Di Fiore; Antimo D’Aniello (pp. 1561-1569).

d-Aspartic acid (d-Asp) is an endogenous amino acid present in neuroendocrine systems. Here, we report evidence that d-Asp in the rat is involved in learning and memory processes. Oral administration of sodium d-aspartate (40 mM) for 12–16 days improved the rats’ cognitive capability to find a hidden platform in the Morris water maze system. Two sessions per day for three consecutive days were performed in two groups of 12 rats. One group was treated with Na-d-aspartate and the other with control. A significant increase in the cognitive effect was observed in the treated group compared to controls (two-way ANOVA with repeated measurements: F _{(2, 105)} = 57.29; P value < 0.001). Five further sessions of repeated training, involving a change in platform location, also displayed a significant treatment effect [F _{(2, 84)} = 27.62; P value < 0.001]. In the hippocampus of treated rats, d-Asp increased by about 2.7-fold compared to controls (82.5 ± 10.0 vs. the 30.6 ± 5.4 ng/g tissue; P < 0.0001). Moreover, 20 randomly selected rats possessing relatively high endogenous concentrations of d-Asp in the hippocampus were much faster in reaching the hidden platform, an event suggesting that their enhanced cognitive capability was functionally related to the high levels of d-Asp. The correlation coefficient calculated in the 20 rats was R = −0.916 with a df of 18; P < 0.001. In conclusion, this study provides corroborating evidence that d-aspartic acid plays an important role in the modulation of learning and memory.

Keywords: d-Aspartic acid; Learning and memory; Rat; Hippocampus; Brain; Morris water maze system

Isoform-specific determinants in the HP1 binding to histone 3: insights from molecular simulations by Matias R. Machado; Pablo D. Dans; Sergio Pantano (pp. 1571-1581).

Despite the significant improvements in anti HIV-1 treatment, AIDS remains a lifelong disease due to the impossibility to eradicate the viral reservoir established upon integration of the viral genome. Controlling the epigenetic block imposed by the host cell machinery to the viral transcription may represent a therapeutic alternative to purge the viral reservoir, offering a way to eradicate the infection. Heterochromatin protein 1 (HP1) has been reported to actively participate in the silencing of HIV-1 integrated genome by binding to histone 3 (H3) tail. This interaction is mediated by the Chromodomain of HP1. Nevertheless, the structural features that determine its binding to H3 tail upon post-transductional modifications, such as methylation and phosphorylation as well as isoform-specific effects have not yet been described. We have undertaken the systematic simulation of the Chromodomains of the isoforms beta and gamma of HP1 in complex with the H3 tail methylated at Lys9 in presence/absence of phosphorylation at Ser10. Our results pinpoint isoform-specific electrostatic interactions as important determinants for the stability of the complexes. Characterization of intermolecular contacts between HP1 variants and H3 furnishes new insights on isoform-specific recognition and the effect of phosphorylation.

Keywords: Epigenetics; HIV-1; Transcription; Phosphorylation; Methylation

Subcellular localization of the interaction between the human immunodeficiency virus transactivator Tat and the nucleosome assembly protein 1 by Alex De Marco; Pablo D. Dans; Anna Knezevich; Paolo Maiuri; Sergio Pantano; Alessandro Marcello (pp. 1583-1593).

The histone chaperone nucleosome assembly protein, hNAP-1, is a host cofactor for the activity of the human immunodeficiency virus type 1 (HIV-1) transactivator Tat. The interaction between these two proteins has been shown to be important for Tat-mediated transcriptional activation and for efficient viral infection. Visualization of HIV-1 transcription and fluorescence resonance energy transfer experiments performed in this work demonstrate that hNAP-1 is not recruited to the site of Tat activity but the two proteins interact at the nuclear rim. These data are consistent with a mechanism that requires hNAP-1 for the transport of Tat within the nucleus rather than for the remodeling of nucleosomes on the provirus. Protein–protein docking and molecular modeling of the complex suggest that this interaction occurs between the basic domain of Tat and the histone-binding domain. The combination of theoretical and whole cell studies provided new insights into the functional significance of the Tat:hNAP-1 recognition.

Keywords: HIV; Chromatin; hNAP-1; FRET; Protein interaction

Metabolic stability of human parathyroid hormone peptide hPTH (1–34) in rat tissue homogenates: kinetics and products of proteolytic degradation by Sha Liao; Jian-Kun Qie; Ming Xue; Zhen-Qing Zhang; Ke-Liang Liu; Jin-Xiu Ruan (pp. 1595-1605).

The present study aim to investigate the metabolic stability and degradation of cleavage sites of human parathyroid hormone peptide, hPTH (1–34), in rat tissue homogenate, and to identify the types of proteases involved in hPTH (1–34) processing degradation. The stability of hPTH (1–34) in rat kidney, lung and liver homogenates was evaluated by LC–ESI–MS, and the structures of the major degradation products were identified by MALDI–TOF MS and LC–ESI–MS/MS. The ability of protease inhibitors to inhibit hPTH (1–34) degradation was used to identify the class of proteases involved in the metabolism of hPTH (1–34). hPTH (1–34) peptide was readily degraded in rat kidney, liver, and lung homogenates, with half-lives of 5.7, 32.2, and 18.9 min, respectively. The degradation of hPTH (1–34) in each tissue can be inhibited by inhibitors of serine and metalloproteases. The major degradation products of hPTH (1–34) are similar in each tissue and suggest that hPTH (1–15) and hPTH (16–34) appear as the major degradation products. The degradation patterns of hPTH (1–34) incubated in rat kidney, liver and lung homogenates are largely overlapping, and a majority of the fragments are generated via cleavages at sites of Leu15–Asn16 peptide bond.

Keywords: Human parathyroid hormone; Degradation; Cleavage site; Mass spectrometry; Enzyme inhibitors

Relevance of allosteric conformations and homocarnosine concentration on carnosinase activity by Verena Peters; Moustafa Kebbewar; Erwin W. Jansen; Cornelis Jakobs; Eva Riedl; Hannes Koeppel; Dirk Frey; Katja Adelmann; Kristina Klingbeil; Matthias Mack; Georg F. Hoffmann; Bart Janssen; Johannes Zschocke; Benito A. Yard (pp. 1607-1615).

Activity of carnosinase (CN1), the only dipeptidase with substrate specificity for carnosine or homocarnosine, varies greatly between individuals but increases clearly and significantly with age. Surprisingly, the lower CN1 activity in children is not reflected by differences in CN1 protein concentrations. CN1 is present in different allosteric conformations in children and adults since all sera obtained from children but not from adults were positive in ELISA and addition of DTT to the latter sera increased OD450 values. There was no quantitative difference in the amount of monomeric CN1 between children and adults. Further, CN1 activity was dose dependently inhibited by homocarnosine. Addition of 80 μM homocarnosine lowered V _max for carnosine from 440 to 356 pmol/min/μg and increased K _m from 175 to 210 μM. The estimated K _i for homocarnosine was higher (240 μM). Homocarnosine inhibits carnosine degradation and high homocarnosine concentrations in cerebrospinal fluid (CSF) may explain the lower carnosine degradation in CSF compared to serum. Because CN1 is implicated in the susceptibility for diabetic nephropathy (DN), our findings may have clinical implications for the treatment of diabetic patients with a high risk to develop DN. Homocarnosine treatment can be expected to reduce CN1 activity toward carnosine, resulting in higher carnosine levels.

Keywords: Carnosine; Homocarnosine; Carnosinase; CN1; Diabetic nephropathy

Folding properties of the hepatitis B core as a carrier protein for vaccination research by Michiel Etienne Janssens; Dirk Geysen; Katleen Broos; Ine De Goeyse; Johan Robbens; Filip Van Petegem; Jean-Pierre Timmermans; Yves Guisez (pp. 1617-1626).

The hepatitis B core (HBc) protein has been used successfully in numerous experiments as a carrier for heterologous peptides. Folding and capsid formation of the chimeric proteins is not always achieved easily. In silico analyses were performed to provide further comprehension of the feasibility for predicting successful capsid formation. In contrast to previous work, we show that common in silico predictions do not ensure assembly into particles. We included new considerations regarding capsid formation of HBc fusion proteins. Not only the primary sequence and the length of the inserts seem important, also the rigidity, the distance between the N and the C-terminus and the presence of cysteines, which could form disulphide bonds, could influence proper capsid formation. Furthermore, new conformational insights were formulated when linkers were added to create extra flexibility of the chimeric particles. Different hypotheses were suggested to clarify the obtained results. To this extent, the addition of glycine-rich linkers could lower high rigidity of the insert, removal of the strain of the core protein or ease interaction between the HBc and the insert. Finally, we observed specific changes in capsid formation properties when longer linkers were used. These findings have not been reported before in this and other virus-like particle carriers. In this study, we also propose a new high-yield purification protocol for fusion proteins to be used in vaccination experiments with the carrier protein or in comparative studies of particulate or non-particulate HBc fusion proteins.

Keywords: Hepatitis B core; Folding; Purification; Carrier

Susceptibility of Pseudomonas aeruginosa to catechol-substituted cephalosporin is unrelated to the pyochelin–Fe transporter FptA by Françoise Hoegy; Michael N. Gwynn; Isabelle J. Schalk (pp. 1627-1629).

Previously it has been postulated that the pyochelin–Fe outer membrane transporter, FptA, is involved in the uptake of catechol-substituted cephalosporins in Pseudomonas aeruginosa. Iron uptake and antibacterial activity studies on different mutants showed clearly that FptA is unable to bind and transport these antibiotics.

Keywords: Siderophore; Iron uptake; Cephalosporine; Outer membrane transporter; TonB

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Amino Acids: The Forum for Amino Acid, Peptide and Protein Research (v.38, #5)