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Analytical and Bioanalytical Chemistry (v.389, #3)

Chhabil Dass: Fundamentals of contemporary mass spectrometry by Jürgen H. Gross (pp. 675-676).

2007 European Winter Conference on Plasma Spectrochemistry, 18–23 February, Taormina (Sicily, Italy) by Maria Betti (pp. 677-677).

has been Head of Analytical Chemistry Sector at the Institute for Transuranium Elements (Karlsruhe, Germany) of the Directorate General Joint Research Centre of the European Commission since 1991. Her main research interest during this period has been the implementation of mass spectrometric methods for the determination of long-lived radionuclides in samples with different origins. Her research group has been working on hyphenated methods with ICP–MS as well as on new applications of glow discharge mass spectrometry. The main fields of application of this work are related to nuclear chemistry, biomedical and environmental research.

Screening organophosphorus nerve agent degradation products in pesticide mixtures by GC-ICPMS by Douglas D. Richardson; Joseph A. Caruso (pp. 679-682).

Gas chromatography inductively coupled plasma mass spectrometry (GC-ICPMS) was utilized for the analysis of four organophosphorus nerve agent degradation products in the presence of mixtures of common organophosphorus pesticides. The first degradation products of sarin (isopropyl methylphosphonic acid, GB acid), cyclosarin (cyclohexyl methylphosphonic acid, GF acid), and soman (pinacolyl methylphosphonic acid) as well as their common final hydrolysis product methyl phosphonic acid were utilized throughout these experiments. Due to the non-volatile nature of these alkyl phosphonic acid degradation products, derivatization was performed to generate the volatile tert-butyl dimethylsilyl species. Degraded organophosphorus pesticide standards were obtained for acephate, chlorpyrifos, dichlorvos, ethion, and parathion ethyl. Mixtures consisting of three pesticides in the presence of a single nerve agent degradation product were prepared. GC-ICPMS allowed for the separation and detection of all four degradation products in the presence of pesticide mixtures in just over 12 minutes. This is the first study analyzing pesticides as interfering species for analysis of nerve agent degradation products by GC-ICPMS.

Keywords: GC; Mass spectrometry; ICP-MS; Pesticides; Endocrine disruptors; Speciation

Quantification of bromine in flame-retardant coatings by radiofrequency glow discharge–optical emission spectrometry by Auristela Solà Vázquez; Antonio Martín; José M. Costa-Fernandez; Jorge Ruiz Encinar; Nerea Bordel; Rosario Pereiro; Alfredo Sanz-Medel (pp. 683-690).

There is an increasing concern regarding the toxicity and environmental distribution and impact of brominated organic compounds employed as flame retardants. Thus, present interest in searching for new analytical techniques and methods allowing a rapid, simple and reliable detection of those compounds in materials and wastes potentially containing such flame retardants is not surprising. The feasibility of using radiofrequency glow discharge plasma spectrometry coupled with optical emission spectrometry (rf-GD-OES) as a rapid and simple tool to directly analyse bromine-containing flame-retardant polymeric layers is investigated here. Polymeric layers for calibration were made by mixing appropriate amounts of tetrabromobisphenol A, bisphenol A, phloroglucinol and diphenylmethane-4,4′-diisocyanate in tetrahydrofuran. The corresponding blanks (polymers without tetrabromobisphenol A) were also prepared. Detection of bromine was investigated both in the visible (at 470.48 nm) and in the near-infrared (at 827.24 nm) regions, using a charge-coupled device for detection. Discharge parameters affecting the emission intensity of bromine were first optimized (in argon and helium as possible plasma gases) and the analytical performance characteristics were then evaluated. The best detection limit (0.044% Br) was achieved measuring Br I 827.24 nm in a He discharge, using a forward power of 70 W and a pressure of 45 Torr. The linearity range extended up to 27% Br. Finally, the applicability of the rf-GD-OES method proposed to the quantitative analysis of bromine in solid materials coated with flame-retardant commercial paints was successfully demonstrated. Figure Flame Retardants

Keywords: Glow discharge; Direct solid analysis; Flame retardants; Bromine; Optical emission spectrometry

Determination of cadmium in grains by isotope dilution ICP–MS and coprecipitation using sample constituents as carrier precipitants by Kazumi Inagaki; Tomohiro Narukawa; Takashi Yarita; Akiko Takatsu; Kensaku Okamoto; Koichi Chiba (pp. 691-696).

A coprecipitation method using sample constituents as carrier precipitants was developed that can remove molybdenum, which interferes with the determination of cadmium in grain samples via isotope dilution inductively coupled plasma mass spectrometry (ID-ICPMS). Samples were digested with HNO₃, HF, and HClO₄, and then purified 6 M sodium hydroxide solution was added to generate colloidal hydrolysis compounds, mainly magnesium hydroxide. Cadmium can be effectively separated from molybdenum because the cadmium forms hydroxides and adsorbs onto and/or is occluded in the colloid, while the molybdenum does not form hydroxides or adsorb onto the hydrolysis colloid. The colloid was separated by centrifugation and then dissolved with 0.2 M HNO₃ solution to recover the cadmium. The recovery of Cd achieved using the coprecipitation was >97%, and the removal efficiency of Mo was approximately 99.9%. An extremely low procedural blank (below the detection limit of ICPMS) was achieved by purifying the 6 M sodium hydroxide solution via Mg coprecipitation using Mg(NO₃)₂ solution. The proposed method was applied to two certified reference materials (NIST SRM 1567a wheat flour and SRM 1568a rice flour) and CCQM-P64 soybean powder. Good analytical results with small uncertainties were obtained for all samples. This method is simple and reliable for the determination of Cd in grain samples by ID-ICPMS. Figure Overview of a coprecipitation method using sample constituents

Keywords: Cadmium; Rice; Wheat; Soybean; Coprecipitation; Isotope dilution ICPMS

Development of an accurate, sensitive, and robust isotope dilution laser ablation ICP-MS method for simultaneous multi-element analysis (chlorine, sulfur, and heavy metals) in coal samples by Sergei F. Boulyga; Jens Heilmann; Thomas Prohaska; Klaus G. Heumann (pp. 697-706).

A method for the direct multi-element determination of Cl, S, Hg, Pb, Cd, U, Br, Cr, Cu, Fe, and Zn in powdered coal samples has been developed by applying inductively coupled plasma isotope dilution mass spectrometry (ICP-IDMS) with laser-assisted introduction into the plasma. A sector-field ICP-MS with a mass resolution of 4,000 and a high-ablation rate laser ablation system provided significantly better sensitivity, detection limits, and accuracy compared to a conventional laser ablation system coupled with a quadrupole ICP-MS. The sensitivity ranges from about 590 cps for ³⁵Cl⁺ to more than 6 × 10⁵ cps for ²³⁸U⁺ for 1 μg of trace element per gram of coal sample. Detection limits vary from 450 ng g⁻¹ for chlorine and 18 ng g⁻¹ for sulfur to 9.5 pg g⁻¹ for mercury and 0.3 pg g⁻¹ for uranium. Analyses of minor and trace elements in four certified reference materials (BCR-180 Gas Coal, BCR-331 Steam Coal, SRM 1632c Trace Elements in Coal, SRM 1635 Trace Elements in Coal) yielded good agreement of usually not more than 5% deviation from the certified values and precisions of less than 10% relative standard deviation for most elements. Higher relative standard deviations were found for particular elements such as Hg and Cd caused by inhomogeneities due to associations of these elements within micro-inclusions in coal which was demonstrated for Hg in SRM 1635, SRM 1632c, and another standard reference material (SRM 2682b, Sulfur and Mercury in Coal). The developed LA-ICP-IDMS method with its simple sample pretreatment opens the possibility for accurate, fast, and highly sensitive determinations of environmentally critical contaminants in coal as well as of trace impurities in similar sample materials like graphite powder and activated charcoal on a routine basis. Figure LA-ICP-IDMS allows direct multi-element determination in powdered coal samples

Keywords: Laser ablation; ICP-MS; Coal; Metals; Sulfur; Chlorine

Use of enriched ⁷⁴Se and ⁷⁷Se in combination with isotope pattern deconvolution to differentiate and determine endogenous and supplemented selenium in lactating rats by H. González Iglesias; M. L. Fernández Sánchez; J. I. García Alonso; A. Sanz-Medel (pp. 707-713).

A quantitative methodology has been developed to differentiate between endogenous and supplemented selenium in lactating rats using two enriched selenium isotopes. Lactating rats were fed for 2 weeks with formula milk containing one enriched Se isotope, ⁷⁷Se, as the metabolic tracer. The isotopic composition of selenium in serum and urine samples was then measured by collision cell ICP-MS after the addition of a solution containing another enriched isotope, ⁷⁴Se, as quantitation tracer, before analysis. Isotope pattern deconvolution allowed the transformation of measured Se isotopic abundances into concentrations of natural abundance (endogenous) selenium and enriched ⁷⁷Se (supplemented) present in the samples. The proposed methodology was validated using serum and urine reference materials spiked with both ⁷⁷Se and ⁷⁴Se. The obtained results are discussed in terms of selenium exchange and half-life in lactating rats (11–12 days) and selenium levels in serum in comparison with non-supplemented rats and control rats after maternal feeding.

Keywords: Isotope pattern deconvolution; Selenium supplementation; Rats; ICP-MS

A study of Se-Hg antagonism in Glycine max (soybean) roots by size exclusion and reversed phase HPLC–ICPMS by Santha Ketavarapu V. Yathavakilla; Joseph A. Caruso (pp. 715-723).

An attempt was made to study selenium (Se) and mercury (Hg) interactions in plants, specifically soybean (Glycine max), by inductively coupled plasma mass spectrometric detection. Greenhouse-cultivated plants were subjected to treatment with different regimens of Se and Hg and analyzed for their metabolized species in roots, stems, leaves, pods and beans. Most of the water-soluble Hg was found to be localized in the roots in association with Se in a high molecular weight entity, as identified by size exclusion chromatography. This entity was also extracted in protein specific isolate, but it resisted enzymatic breakdown. Complete breakdown of this high molecular weight species was accomplished by acid hydrolysis. Optimization of the conditions for acid hydrolysis is discussed. Hg and Se species found in root extract were studied by ion-pairing chromatography. In a sub-study, the Se distribution pattern was found to be unaffected by the presence of Hg, but the amount of Se assimilated was found to be higher in plants coexposed to Hg.

Keywords: Ion chromatography; Ion exchange; Mass spectrometry; ICP–MS; Metals; Heavy metals; Se and Hg; Acid hydrolysis

Origin and release date assessment of environmental plutonium by isotopic composition by Zsolt Varga (pp. 725-732).

The origin and release date of environmental plutonium have been assessed by the measurement of plutonium and americium isotopic composition. The applicability and sensitivity of different plutonium isotope ratios, ²⁴⁰Pu/²³⁹Pu and ²⁴¹Pu/²³⁹Pu measured by inductively coupled plasma sector field mass spectrometry and ²³⁸Pu/²³⁹Pu analysed by alpha spectrometry, have been evaluated for origin determination in several types of environmental samples. With use of mixing models the contribution of different sources (e.g. global fallout or Chernobyl) can be calculated. By the measurement of the ²⁴¹Am/²⁴¹Pu isotope ratio, the release date (i.e. formation of ²⁴¹Pu by irradiation) can be estimated in environmental samples, which is an important parameter to distinguish recent plutonium release from previous (e.g. Chernobyl) emissions.

Keywords: Plutonium; Americium; Isotope ratio measurement; Origin; Date assessment

Flow field–flow fractionation–inductively coupled optical emission spectrometric investigation of the size-based distribution of iron complexed to phytic and tannic acids in a food suspension: implications for iron availability by Sopon Purawatt; Atitaya Siripinyanond; Juwadee Shiowatana (pp. 733-742).

Flow field–flow fractionation–inductively coupled plasma optical emission spectrometry (FlFFF–ICP–OES) was applied to achieve the size-based fractionation of iron in a food suspension in order to gain insights into iron availability. The binding of iron with phytic and tannic acids, employed as model inhibitors of iron availability in foods, was investigated at pH 2.0 (representing stomach fluid), pH 5.0 (the transition stage in the upper part of the duodenum), and pH 7.0 (the small intestine). In the presence of phytic acid, iron was found as a free ion or it was associated with molecules smaller than 1 kDa at pH 2.0. Iron associated with molecules larger than 1 kDa when the pH of the mixture was raised to 5.0 and 7.0. In the presence of tannic acid, iron was again mostly associated with molecules smaller than 1 kDa at pH 2.0. However, at pH 5.0, iron and tannic acid associated in large molecules (∼25 kDa), while at pH 7.0, most of the iron was associated with macromolecules larger than 500 kDa. Iron size-based distributions of kale extract and tea infusion containing phytic and tannic acids, respectively, were also examined at the three pH values, with and without enzymatic digestion. Without enzymatic digestion of the kale extract and the tea infusion at pH 2.0, most of the iron was released as free ions or associated with molecules smaller than 1 kDa. At other pH values, most of the iron in the kale extract and the tea infusion was found to bind with ~2 kDa and >500 kDa macromolecules, respectively. Upon enzymatic gastrointestinal digestion, the iron was not observed to bind to macromolecules >1 kDa but <500 kDa, due to the enzymatic breakdown of large molecules to smaller ones (<1 kDa). Figure Flow field–flow fractionation was exploited in order to achieve size-based iron fractionation and thus investigate iron-binding behavior under gastrointestinal conditions

Keywords: Iron; FlFFF; ICP–OES; Size-based elemental fractionation

Nitrogen effects in multi-matrix calibrations by radiofrequency glow discharge – optical emission spectrometry by Lara Lobo; Beatriz Fernandez; Rosario Pereiro; Nerea Bordel; Alfredo Sanz-Medel (pp. 743-752).

A study about the effect of nitrogen in the calibration curves of a series of analytical emission lines has been carried out in this work. Fifteen reference materials with different matrices (Fe, Al, Zn, Cu and Ni) were used (three of these reference materials contain nitrogen in their composition) and plots of intensity versus the product “sputtering rate times element concentration” were constructed for emission lines of the analytes considered in this work (Al, Fe, Cu, Cr, C, Mo, Zn, Si, Ti and Ni). Two different fits were performed in each plot, first considering only the points corresponding to samples without nitrogen in their composition and secondly including all the points. The results show almost negligible differences in the emission yields calculated. On the other hand, a mixture of Ar containing 0.5% N₂ was employed to check if the nitrogen effect was present at higher concentrations than those expected in analysis when samples with high nitrogen concentrations are used. Differences between the slopes of the calibration curves with the Ar/N₂ and pure Ar discharges were obtained (up to 30%). A study of the molecular bands recorded in the spectra when nitrogen is present in the discharge and determination of the resulting interferences on the analytes have been performed. Figure Glow discharge powered with radiofrequency energy

Keywords: Nitrogen; Glow discharge; Optical emission spectrometry; Multi-matrix calibration

Direct elemental analysis of biodiesel by inductively coupled plasma–mass spectrometry by G. D. Woods; F. I. Fryer (pp. 753-761).

An ICP–MS instrument fitted with an octopole reaction system (ORS) was used to directly measure the inorganic contents of several biofuel materials. Following sample preparation by simple dilution in kerosene, the biofuels were analysed directly. The ORS effectively removed matrix- and plasma-based spectral interferences to enable measurement of all important analytes, including sulfur, at levels below those possible by ICP–OES. A range of commonly produced biofuels was analysed, and spike recovery and long-term stability data was acquired. Suitably configured ICP–MS has been shown to be a fast and very sensitive technique for the elemental analysis of biofuels.

Keywords: Spectroscopy/Instrumentation; Mass spectrometry/ICP–MS; Metals/Heavy metals; Organometals; Quality assurance/control; Trace elements

A simple method for measuring plasma power in rf-GDOES instruments by T. Nelis; M. Aeberhard; L. Rohr; J. Michler; P. Belenguer; P. Guillot; L. Thérèse (pp. 763-767).

A method for determining plasma power in rf-GDOES is presented. It is based on an effective resistance located in the inductive coil of the impedance matching. The amount of electrical power consumed in the matching system depends on the capacitive current flowing through the matching system, which depends on the applied voltage, the stray capacity, and the frequency. This correction method is experimentally evaluated and compared with the integral plasma power calculation.

Keywords: rf-GDOES; rf-Power control; Blind power

Trace metals in mussel shells and corresponding soft tissue samples: a validation experiment for the use of Perna perna shells in pollution monitoring by V. R. Bellotto; N. Miekeley (pp. 769-776).

The uptake of Cr, Mn, Ni, Cu, Zn, Cd and Pb in soft tissue of Perna perna mussels and their shells has been studied in aquarium experiments in which mussels were exposed for 30 or 60 days to seawater spiked with different concentrations of these contaminants (125 and 500 μg L⁻¹). Tissue samples were analyzed after acid digestion by conventional solution nebulization ICP–MS. Laser ablation ICP–MS was used for the quantitative determination of trace elements in different areas of the corresponding shells. With the exception of Mn and Zn, all other elements studied showed a significant concentration enhancements in soft tissue, with the magnitude of this enhancement following the order: Cr > Ni > Cd > Cu > Pb. A corresponding increase in most contaminants, although less pronounced, was also observed in the newly formed growth rings of mussel shells, contributing to the validation of Perna perna mussel shell as a bioindicator of toxic elements.

Keywords: Trace metals; Mussel shells; Perna perna ; LA–ICP–MS; Marine pollution

Hyphenation of reverse-phase HPLC and ICP-MS for metabolite profiling—application to a novel antituberculosis compound as a case study by Lieve I. L. Balcaen; Björn De Samber; Kenny De Wolf; Filip Cuyckens; Frank Vanhaecke (pp. 777-786).

In this study, a high-performance liquid chromatography (HPLC) inductively coupled plasma (ICP) mass spectrometry (MS) method was developed intended for use in metabolism studies of bromine-containing drugs, administered to test animals (or test persons). As a case study, the method was applied to a new antituberculosis compound, the bromine-containing diarylquinoline R207910. A method has been proposed to overcome the incompatibilities between the high organic solvent content (45%CH₃OH and 45% CH₃CN) used in the reverse-phase liquid chromatography (LC) separation on one hand and the limitations of the ICP on the other hand. Therefore, several instrument modifications had to be made. For the introduction of the column effluent, a combination of a perfluoroalkoxy LC nebulizer with a PC³ Peltier-cooled inlet system (operated at 2 °C) was used. Additionally, the standard injector tube (internal diameter 2 mm) was replaced by an injector tube with an internal diameter of 1 mm and to avoid carbon build-up on the interface cones and the torch, the nebulizer gas was admixed with 6% v/v of oxygen. After optimization of the method, HPLC-ICP-MS was applied for metabolite profiling of faeces samples after dosing of ¹⁴C-radiolabelled R207910 to dogs and rats. To evaluate the method developed, the HPLC-ICP-MS results were compared with those of HPLC with UV spectrophotometric and ¹⁴C radiochemical detection. As the HPLC-ICP-MS method gave rise to a higher selectivity than HPLC with UV detection and to a better detection limit (5 ng R207910) than the method with radiochemical detection (65 ng R207910), it can be concluded that ICP-MS can be used as a good alternative to the more traditional detection methods, even when a mobile phase with high organic solvent content has to be used in the LC separation.

Keywords: High-performance liquid chromatography–inductively coupled plasma mass spectrometry; On-line coupling; Metabolite profiling; Organic solvent; Tuberculosis

Simultaneous determination of inorganic mercury, methylmercury, and total mercury concentrations in cryogenic fresh-frozen and freeze-dried biological reference materials by David Point; W. Clay Davis; J. Ignacio Garcia Alonso; Mathilde Monperrus; Steven J. Christopher; Olivier F. X. Donard; Paul R. Becker; Stephen A. Wise (pp. 787-798).

Two speciated isotope dilution (SID) approaches consisting of a single-spike (SS) method and a double-spike (DS) method including a reaction/transformation model for the correction of inadvertent transformations affecting mercury species were compared in terms of accuracy, method performance, and robustness for the simultaneous determination of methylmercury (MeHg), inorganic mercury (iHg), and total mercury (HgT) concentrations in five biological Standard Reference Materials (SRMs). The SRMs consisted of oyster and mussel tissue materials displaying different mercury species concentration levels and different textural/matrix properties including freeze-dried (FD) materials (SRMs 1566b, 2976, and 2977) and cryogenically prepared and stored fresh-frozen (FF) materials (SRMs 1974a, 1974b). Each sample was spiked with ²⁰¹iHg (Oak Ridge National Laboratory, ORNL) and Me²⁰²Hg (Institute for Reference Materials and Measurements. IRMM-670) solutions and analyzed using alkaline microwave digestion, ethylation, and gas chromatography inductively coupled plasma mass spectrometry (GC/ICP-MS). The results obtained by the SS-SID method suggested that FF and FD materials are not always commutable for the simultaneous determination of iHg, MeHg, and HgT, due to potential transformation reactions resulting probably from the methodology and/or from the textural/matrix properties of the materials. These transformations can occasionally significantly affect mercury species concentration results obtained by SS-SID, depending on the species investigated and the materials considered. The results obtained by the DS-SID method indicated that the two classes of materials were commutable. The simultaneous and corrected concentrations of iHg, MeHg, and HgT obtained by this technique were not found to be statistically different form the certified and reference concentration together with their expanded uncertainty budgets for the five SRMs investigated, exemplifying the robustness, the accuracy, and the improved commutability of this method compared to SS-SID measurements.

Keywords: Speciation; Mercury; Methylmercury; ICP-MS; Speciated isotope dilution; Standard Reference Material (SRM)

Alteration of biological samples in speciation analysis of metalloproteins by Christian Wolf; Nadine Wenda; Andrea Richter; Antonios Kyriakopoulos (pp. 799-810).

For investigations of metalloproteins by speciation analysis, the integrity of the protein–metal complexes before and during separation is crucial. Knowledge about potential alterations of the samples is thus essential to avoid misinterpretations of the analytical results. Chromatographic element profiles of different cytosolic samples from animal tissues were measured repeatedly to estimate the sample stability. The dependence of the signals on the dwell time of the sample in an autosampling device at 4 °C for a period of 10 h was observed. Alterations in the element content of different metal-containing fractions were quantified by means of recovery values. Some metalloprotein fractions (e.g. ≈27-kDa arsenic, ≈27-kDa iron and different zinc fractions) were stable or only minor alterations were observed and for their investigation an autosampling device is therefore suitable. However, most of the other metalloprotein fractions, especially nickel-containing proteins, showed major alterations: these samples should therefore be analysed immediately after preparation or directly after thawing. Figure Chromatographic manganese-profiles of 11 repeated SEC-ICP-MS-separations of rat brain cytosol. The first sample at time 0 h was the run immediately started after thawing of the prepared cytosol; the other samples were measured hourly, taken from the same sample vial. In addition to the time axis the estimated molecular mass axis is plotted

Keywords: Biological samples; Stability; Metalloproteins; HPLC-ICP-MS; Speciation; Trace elements

Cross validation of multiple methods for measuring pyrethroid and pyrethrum insecticide metabolites in human urine by Dana B. Barr; Gabriele Leng; Edith Berger-Preiß; Hans-Wolfgang Hoppe; Gayanga Weerasekera; Wolfgang Gries; Susanne Gerling; Jose Perez; Kimberly Smith; Larry L. Needham; Jürgen Angerer (pp. 811-818).

The objective of our study was to compare three vastly different analytical methods for measuring urinary metabolites of pyrethroid and pyrethrum insecticides to determine whether they could produce comparable data and to determine if similar analytical characteristics of the methods could be obtained by a secondary laboratory. This study was conducted as a part of a series of validation studies undertaken by the German Research Foundation’s Committee on the Standardization of Analytical Methods for Occupational and Environmental Medicine. We compared methods using different sample preparation methods (liquid–liquid extraction and solid-phase extraction with and without chemical derivatization) and different analytical detection methods (gas chromatography–mass spectrometry (single quadrupole), gas chromatography–high resolution mass spectrometry (magnetic sector) in both electron impact ionization and negative chemical ionization modes, and high-performance liquid chromatography–tandem mass spectrometry (triple quadrupole) with electrospray ionization). Our cross validation proved that similar analytical characteristics could be obtained with any combination of sample preparation/analytical detection method and that all methods produced comparable analytical results on unknown urine samples. Cross-method comparison using unknown urine samples revealed reasonably good agreement for any combination of the methods tested

Keywords: Pyrethroid insecticides; Pyrethrum; Biomonitoring; Mass spectrometry; Intercomparison

Surface plasmon resonance imaging for affinity analysis of aptamer–protein interactions with PDMS microfluidic chips by Zhuangzhi Wang; Thomas Wilkop; Danke Xu; Yi Dong; Guangyu Ma; Quan Cheng (pp. 819-825).

We report on the use of PDMS multichannels for affinity studies of DNA aptamer–human Immunoglobulin E (IgE) interactions by surface plasmon resonance imaging (SPRi). The sensing surface was prepared with thiol-terminated aptamers through a self-assembling process in the PDMS channels defined on a gold substrate. Cysteamine was codeposited with the thiol aptamers to promote proper spatial arrangement of the aptamers and thus maintain their optimal binding efficiencies. Four aptamers with different nucleic acid sequences were studied to test their interaction affinity toward IgE, and the results confirmed that aptamer I (5′-SH-GGG GCA CGT TTA TCC GTC CCT CCT AGT GGC GTG CCC C-3′) has the strongest binding affinity. Control experiments were conducted with a PEG-functionalized surface and IgG was used to replace IgE in order to verify the selective binding of aptamer I to the IgE molecules. A linear concentration-dependent relationship between IgE and aptamer I was obtained, and a 2-nM detection limit was achieved. SPRi data were further analyzed by global fitting, and the dissociation constant of aptamer I–IgE complex was found to be 2.7 × 10⁻⁷ M, which agrees relatively well with the values reported in the literature. Aptamer affinity screening by SPR imaging demonstrates marked advantages over competing methods because it does not require labeling, can be used in real-time, and is potentially high-throughput. The ability to provide both qualitative and quantitative results on a multichannel chip further establishes SPRi as a powerful tool for the study of biological interactions in a multiplexed format. Figure The SPRi sensograms and thier global fits for aptamer I and IgE interactions. Insert in the difference image obtained with the PDMS microchannel flow cell for aptamer IV, III, and I (from left to right

Keywords: Surface plasmon resonance; SPR imaging; Aptamer; DNA–protein interaction

A direct and simple method of coupling matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) to thin-layer chromatography (TLC) for the analysis of phospholipids from egg yolk by Beate Fuchs; Jürgen Schiller; Rosmarie Süß; Martin Schürenberg; Detlev Suckau (pp. 827-834).

Although the most important application of matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) is “proteomics,” there is growing evidence that this soft ionization method is also useful for phospholipid (PL) analysis. Although all PLs are detectable by MALDI-TOF MS, some lipid classes, particularly those with quaternary amines such as phosphatidylcholines (PCs), are more sensitively detected than others, and these suppress the signals of less sensitively detected PLs when complex mixtures are analyzed. Therefore, a separation of the total organic extract into individual lipid classes is necessary. As MALDI uses a solid sample, the direct evaluation of thin-layer chromatography (TLC) plates is possible. We report here on a method of directly coupling MALDI-TOF MS and TLC that can be easily implemented on commercially available MALDI-TOF devices. A total extract of hen egg yolk is used as a simple PL mixture to demonstrate the capabilities of this method. It will be shown that “clean” spectra without any major contributions from fragmentation products and matrix peaks can be obtained, and that this approach is even sensitive enough to detect the presence of PLs at levels of less than 1% of the total extract. Figure TLC/MALDI coupling is performed in the following way: Phospholipids are separated by TLC in the conventional way and stained with the dye PRIMULINE that binds non-covalently to the acyl residues of phospholipids. Afterwards, the spots of interest are soaked with matrix and the TLC plate mounted onto a special adapter target. This target is introduced into the mass spectrometer and analyzed in the conventional manner

Keywords: MALDI-TOF MS; TLC; Coupling; Hen egg yolk; Phospholipids

A simple and highly repeatable colorimetric toxicity assay method using 2,6-dichlorophenolindophenol as the redox color indicator and whole eukaryote cells by H. Nakamura; Y. Hirata; Y. Mogi; S. Kobayashi; K. Suzuki; T. Hirayama; I. Karube (pp. 835-840).

A simple and highly reproducible toxicity assay method was studied by employing 2,6-dichlorophenolindophenol (DCIP) as a redox color indicator, baker’s yeast Saccharomyces cerevisiae, and a thermostable three-consecutive-stir unit. The absorbance of DCIP was decreased by increasing the metabolism activity of S. cerevisiae to intake glucose as an organic substance. By optimizing the measurement conditions, we obtained highly sensitive responses to glucose between 0.75 and 30 mg/L (eight points, n = 3) with an incubation time of the reaction mixture of 10 min at 30 °C. An excellent value of 1.15% was obtained as the average of the repeatability from eight points. Next, for the characterization of this method, we investigated the influence on the colorimetric response of dissolved substances, such as inorganic ions and surfactants, in natural water. Furthermore, the colorimetric responses to several toxicants were examined using Cu²⁺, Mn²⁺, Zn²⁺, Cr³⁺, and Fe³⁺ as heavy-metal ions and simazine as an agricultural chemical. As a result, notable colorimetric responses were obtained for Cu²⁺ and Mn²⁺ at several concentrations, and the results were compared with those obtained using river water as a real sample. In the stability test, responses to 30 mg/L glucose were obtained for 28 days when the yeast cell suspension was stored at 4 °C (response reduction, 43.9%; average of the relative standard deviation for nine testing days, 22.7%; average of repeatability, 1.01%). Figure Graphical image of the colorimetric toxicity assay

Keywords: Eukaryote cell; Colorimetry; Toxicity assay; Redox color indicator; Heavy-metal ions

Diagonal chromatographic selection of cysteinyl peptides modified with benzoquinones by Loïc Dayon; Hubert H. Girault (pp. 841-849).

The derivatization of cysteine-containing peptides with benzoquinone compounds is rapid, quantitative and specific in acidic media. The conversion of cysteines into hydrophobic benzoquinone-adducted residues in peptides is used here to alter the chromatographic properties of cysteinyl peptides during liquid chromatography separation. The benzoquinone derivatization is shown to allow the accurate selection of cysteine-containing peptides of bovine serum albumin tryptic digest by diagonal reversed-phase chromatography, which consists of one primary and a series of secondary identical liquid chromatographic separations, before and after a cysteinyl-targeted modification of the peptides by benzoquinone compounds. Figure Diagonal chromatographic selection of cysteinyl peptides modified with benzoquinones

Keywords: COFRADIC™; Labeling; Liquid chromatography; Mass spectrometry; Proteomics; Tagging

Application of the avidin–biotin interaction to immobilize DNA in the development of electrochemical impedance genosensors by A. Bonanni; M. I. Pividori; M. del Valle (pp. 851-861).

Impedance spectroscopy is a rapidly developing technique for the transduction of biosensing events at the surface of an electrode. The immobilization of biomaterial as DNA strands on the electrode surface alters the capacitance and the interfacial electron transfer resistance of the conductive electrodes. The impedimetric technique is an effective method of probing modifications to these interfacial properties, thus allowing the differentiation of hybridization events. In this work, an avidin bulk-modified graphite–epoxy biocomposite (Av-GEB) was employed to immobilize biotinylated oligonucleotides as well as double-stranded DNA onto the electrode surface. Impedance spectra were recorded to detect the change in the interfacial electron transfer resistance (R _et) of the redox marker ferrocyanide/ferricyanide at a polarization potential of +0.17 V. The sensitivity of the technique and the good reproducibility of the results obtained with it confirm the validity of this method based on a universal affinity biocomposite platform coupled with the impedimetric technique.

Keywords: Impedance; DNA; Biocomposite; Biotin; Avidin

Modeling and simulation of chemo-electro-mechanical behavior of pH-electric-sensitive hydrogel by Rongmo Luo; Hua Li; Khin Yong Lam (pp. 863-873).

A chemo-electro-mechanical multi-field model, termed the multi-effect-coupling pH-electric-stimuli (MECpHe) model, has been developed to simulate the response behavior of smart hydrogels subject to pH and electric voltage coupled stimuli when the hydrogels are immersed in a pH buffer solution subject to an externally applied electric field. The MECpHe model developed considers multiphysics effects and formulates the fixed charge density with the coupled buffer solution pH and electric voltage effects, expressed by a set of nonlinear partial differential governing equations. The model can be used to predict the hydrogel displacement and the distributive profiles of the concentrations of diffusive ionic species and the electric potential and the fixed charge density in both the hydrogels and surrounding solution. After validation of the model by comparison of current numerical results with experiment data extracted from the literature, one-dimensional steady-state simulations were carried out for equilibrium of the smart hydrogels subject to pH and electric coupled stimuli. The effects of several important physical conditions, including the externally applied electric voltage, on the distributions of the concentrations of diffusive ionic species, the electric potential, the fixed charge density, and the displacement of the hydrogel strip were studied in detail. The effects of the ionic strength on the bending deformation of the hydrogels under the solution pH and electric voltage coupled stimuli are also discussed.

Keywords: pH-electric-sensitive hydrogel; Chemo-electro-mechanical model; Smart materials; Solution pH and electric voltage coupled stimuli; Bending deformation; Meshless method

Proof of principle of a generalized fuzzy Hough transform approach to peak alignment of one-dimensional ¹H NMR data by Leonard Csenki; Erik Alm; Ralf J. O. Torgrip; K. Magnus Åberg; Lars I. Nord; Ina Schuppe-Koistinen; Johan Lindberg (pp. 875-885).

In metabolic profiling, multivariate data analysis techniques are used to interpret one-dimensional (1D) ¹H NMR data. Multivariate data analysis techniques require that peaks are characterised by the same variables in every spectrum. This location constraint is essential for correct comparison of the intensities of several NMR spectra. However, variations in physicochemical factors can cause the locations of the peaks to shift. The location prerequisite may thus not be met, and so, to solve this problem, alignment methods have been developed. However, current state-of-the-art algorithms for data alignment cannot resolve the inherent problems encountered when analysing NMR data of biological origin, because they are unable to align peaks when the spatial order of the peaks changes—a commonly occurring phenomenon. In this paper a new algorithm is proposed, based on the Hough transform operating on an image representation of the NMR dataset that is capable of correctly aligning peaks when existing methods fail. The proposed algorithm was compared with current state-of-the-art algorithms operating on a selected plasma dataset to demonstrate its potential. A urine dataset was also processed using the algorithm as a further demonstration. The method is capable of successfully aligning the plasma data but further development is needed to address more challenging applications, for example urine data. Figure Traces of NMR peaks visualizing the Generalized Fuzzy Hough Transform (GFHT) method for elucidating peak correspondence between samples. The spectra are sorted according to one shift sensitive peak and reveals that other peaks exhibit a similar shift pattern. This pattern(s) can now be searched for using the GFHT. The red and black spectra in the figure are the most shifting spectra (top and bottom), by following the GFHT traces peak correspondence is easily established although peaks change spatial location

Keywords: NMR; Peak detection; Hough transform; Alignment; Metabolic profiling

Aptamer-based label-free method for hemin recognition and DNA assay by capillary electrophoresis with chemiluminescence detection by Tao Li; Bingling Li; Shaojun Dong (pp. 887-893).

An aptamer-based label-free approach to hemin recognition and DNA assay using capillary electrophoresis with chemiluminescence detection is introduced here. Two guanine-rich DNA aptamers were used as the recognition element and target DNA, respectively. In the presence of potassium ions, the two aptamers folded into the G-quartet structures, binding hemin with high specificity and affinity. Based on the G-quartet–hemin interactions, the ligand molecule was specifically recognized with a K _d ≈ 73 nM, and the target DNA could be detected at 0.1 μM. In phosphate buffer of pH 11.0, hemin catalyzed the H₂O₂-mediated oxidation of luminol to generate strong chemiluminescence signal; thus the target molecule itself served as an indicator for the molecule–aptamer interaction, which made the labeling and/or modification of aptamers or target molecules unnecessary. This label-free method for molecular recognition and DNA detection is therefore simple, easy, and effective. Figure A label-free approach to aptamer-based hemin recognition and DNA detection is introduced, which gives great potential for using a small molecule itself as the indicator for molecular recognition and DNA detection thereby avoiding any labeling or modification step

Keywords: Aptamer; Hemin; DNA; Molecular recognition; Capillary electrophoresis

Chiral complexation and aggregation of bilirubin with serum albumin at a liquid/liquid interface by Jian-Hua Yin; Hitoshi Watarai (pp. 895-902).

The chiral complexation of bilirubin (BR) with bovine and human serum albumin (BSA and HSA), and the aggregation of the complexes at the heptane+chloroform(5:1)/water interface were studied via UV/Vis absorption and circular dichroism (CD) measurements in combination with the centrifugal liquid membrane (CLM) method. The interfacial adsorptivities of BR, BSA and their complexes were also studied by performing interfacial tension measurements at the interface. The changes in the absorbances and the induced CD amplitudes of the interfacial BR–BSA complex provided insights into the mechanism of the conformational enantioselective complexation at the interface, and indicated that the chiral conversion induced by the complexation with BSA was from the P(+) form to the M(−) form of BR. The broadening of the 450 nm band and the appearance of a new shoulder at 474 nm further supported the formation of aggregates of the complexes at the interface. The dependence of the CD amplitude on the molar ratio of BSA to BR revealed that the composition of the complex was 1:1 BSA:BR. The probable interfacial reaction scheme was proposed, and the affinity constant of BR–BSA at the interface was found to be 4.67 × 10⁸ M⁻². The interfacial complexation and aggregation of BR and HSA were weaker than those of the BR–BSA complex due to the different BR binding positions adopted for BSA and HSA and the binding effect of chloroform. Figure Enatioselective interfacial complexation and aggregation

Keywords: Bilirubin; Serum albumin; Interfacial chiral complexation; Chiral aggregation; Circular dichroism; Liquid/liquid interface

Enzyme-linked immunosorbent assay and colloidal gold immunoassay for ochratoxin A: investigation of analytical conditions and sample matrix on assay performance by Xiang-Hong Wang; Tao Liu; Na Xu; Yan Zhang; Shuo Wang (pp. 903-911).

A polyclonal antibody against ochratoxin A (OTA) was produced from rabbits immunized with the OTA–BSA conjugate. A competitive direct enzyme-linked immunosorbent assay (cdELISA) and a membrane-base colloidal gold immunoassay in flow-through format were developed for the rapid detection of OTA in various food matrices. In the cdELISA, the concentration causing 50% inhibition was 0.07 ng mL⁻¹, and the effects of different chemical conditions (ionic strength, pH value, and organic solvent) were studied. The sensitivity of the assay was higher than those previously reported. A simple, rapid, and efficient extraction method was developed and 74–110% recoveries of spiked samples were obtained. Fifty percent methanol extracts of some food samples such as barley, wheat, oat, corn, rice, and raisins could be analyzed directly by immunoassay after dilution in PBS; grape juice and beer samples could be analyzed directly after dilution with PBS; for coffee samples, a more complex method was used to remove the matrix effect effectively. Membrane-based colloidal gold immunoassays had a visual detection limit of 1.0 ng mL⁻¹ for OTA with a detection time of less than 10 min. For the validation of the cdELISA and membrane-based colloidal gold immunoassay, samples were analyzed by high-performance liquid chromatography. The correlation between data obtained using the microwell assay and HPLC was good (R ² = 0.984). The developed immunoassay methods are suitable for the rapid quantitative or qualitative determination of OTA in food samples.

Keywords: Ochratoxin A; Polyclonal antibody; ELISA; Colloidal gold immunoassay; Matrix effect

A DNA electrochemical sensor prepared by electrodepositing zirconia on composite films of single-walled carbon nanotubes and poly(2,6-pyridinedicarboxylic acid), and its application to detection of the PAT gene fragment by Jie Yang; Kui Jiao; Tao Yang (pp. 913-921).

Carboxyl group-functionalized single-walled carbon nanotubes (SWNTs) and 2,6-pyridinedicarboxylic acid (PDC) were electropolymerized by cyclic voltammetry on a glassy-carbon electrode (GCE) surface to form composite films (SWNTs/PDC). Zirconia was then electrodeposited on the SWNTs/PDC/GCE from an aqueous electrolyte containing ZrOCl₂ and KCl by cycling the potential between −1.1 V and +0.7 V at a scan rate of 20 mV s⁻¹. DNA probes with a phosphate group at the 5′ end were easily immobilized on the zirconia thin films, because of the strong affinity between zirconia and phosphate groups. The sensors were characterized by cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). EIS was used for label-free detection of the target DNA by measuring the increase of the electron transfer resistance (R _et) of the electrode surface after the hybridization of the probe DNA with the target DNA. The PAT gene fragment and polymerase chain reaction (PCR) amplification of the NOS gene from transgenically modified beans were satisfactorily detected by use of this DNA electrochemical sensor. The dynamic range of detection of the sensor for the PAT gene fragment was from 1.0 × 10⁻¹¹ to 1.0 × 10⁻⁶ mol L⁻¹ and the detection limit was 1.38 × 10⁻¹² mol L⁻¹.

Keywords: Single-walled carbon nanotubes; 2,6-Pyridinedicarboxylic acid; Zirconia; DNA electrochemical biosensor; PAT transgene

Determination of trapidil in human serum and urine by derivative UV spectrophotometry after selective solid-phase extraction by Gaetano Ragno; Antonella Risoli; Michele De Luca; Giuseppina Ioele; Filomena Oliverio (pp. 923-929).

A novel analytical technique able to determine the anti-ischemic drug trapidil in human serum and urine is proposed. In order to achieve satisfactory sensitivity and selectivity, an extraction procedure was required to isolate the drug from complex matrixes such as serum and urine. A solid-phase extraction procedure was investigated to both increase the analyte concentration and eliminate the interfering molecules present in large amounts in both matrixes. Optimization of the extraction step was realized by selecting a new polymeric sorbent based on a surface-modified styrene–divinylbenzene polymer which provided fast and efficient drug extraction. Drug quantification was performed by using the third-order derivative spectra of the SPE eluates. Absorbance specific signals at ³D_335,316 and ³D₃₁₆ nm for urine and serum, respectively, were demonstrated to be directly proportional to drug concentration and barely affected by residual matrix interferences. Under the optimized experimental conditions the calibration plots were linear over the concentration range 0.2–50 μg mL⁻¹. The method was validated by analysis of a series of spiked samples. Accuracy (recovery of 95 and 94% for serum and urine, respectively) and precision (RSD below 4%) were good. Figure Assay of Trapidil in biological fluids by SPE and derivative spectrophotometry

Keywords: Trapidil assay; SPE; Derivative spectrophotometry; Biological matrixes

Characterization of (¹³C₂₄) T-2 toxin and its use as an internal standard for the quantification of T-2 toxin in cereals with HPLC–MS/MS by G. Häubl; F. Berthiller; C. Hametner; J. Rechthaler; G. Jaunecker; M. Freudenschuss; R. Krska; R. Schuhmacher (pp. 931-940).

In this paper, the structure and the identity of fully ¹³C-substituted T-2 toxin were confirmed using high-resolution mass spectrometry, ¹H-NMR, ¹³C-NMR, tandem mass spectrometry and HPLC–DAD. The purity of this compound was estimated to be at least 98.8% according to UV data. The isotopic distribution of (¹³C₂₄) T-2 toxin indicated a total isotopic enrichment of 98.2 ± 1.0 atom% ¹³C, and the application of different MS measurement modes revealed the MS/MS fragmentation pattern of T-2 toxin. Furthermore, a stable isotope dilution mass spectrometry method for the quantification of T-2 toxin was developed using (¹³C₂₄) T-2 toxin as internal standard. The method was evaluated with and without conventional clean-up and validated for maize and oats. Both cereals showed strong matrix enhancement effects, which could be compensated for through the application of the isotope-substituted internal standard.

Keywords: T-2 toxin; Mass spectrometry; Isotope dilution; Internal standard; Maize; Oat

Prediction of retention times of polycyclic aromatic hydrocarbons and n-alkanes in temperature-programmed gas chromatography by Fredrik Aldaeus; Yasar Thewalim; Anders Colmsjö (pp. 941-950).

We have developed an iterative procedure for predicting the retention times of polycyclic aromatic hydrocarbons (PAHs) and n-alkanes during separations by temperature-programmed gas chromatography. The procedure is based on estimates of two thermodynamic properties for each analyte (the differences in enthalpy and entropy associated with movements between the stationary and mobile phases) derived from data acquired experimentally in separations under isothermal conditions at temperatures spanning the range covered by the temperature programs in ten-degree increments. The columns used for this purpose were capillary columns containing polydimethylsiloxane-based stationary phases with three degrees of phenyl substitution (0%, 5%, and 50%). Predicted values were mostly within 1% of experimentally determined values, implying that the method is stable and precise. Figure Predicted values were mostly within 1 % of experimentally determined values, thus implying that the method is stable and precise

Keywords: Gas chromatography; Polycyclic aromatic hydrocarbons; n-Alkanes; Retention time; Prediction

Voltammetry and amperometric detection of tetracyclines at multi-wall carbon nanotube modified electrodes by D. Vega; L. Agüí; A. González-Cortés; P. Yáñez-Sedeño; J. M. Pingarrón (pp. 951-958).

The voltammetric behaviour and amperometric detection of tetracycline (TC) antibiotics at multi-wall carbon nanotube modified glassy carbon electrodes (MWCNT-GCE) are reported. Cyclic voltammograms of TCs showed enhanced oxidation responses at the MWCNT-GCE with respect to the bare GCE, attributable to the increased active electrode surface area. Hydrodynamic voltammograms obtained by flow-injection with amperometric detection at the MWCNT-GCE led us to select a potential value E _det = +1.20 V. The repeatability of the amperometric responses was much better than that achieved with bare GCE (RSD ranged from 7 to 12%), with RSD values for i _p of around 3%, thus demonstrating the antifouling capability of MWCNT modified electrodes. An HPLC method with amperometric electrochemical detection (ED) at the MWCNT-GCE was developed for tetracycline, oxytetracycline (OTC), chlortetracycline and doxycycline (DC). A mobile phase consisting of 18:82 acetonitrile/0.05 mol L⁻¹ phosphate buffer of pH 2.5 was selected. The limits of detection ranged from 0.09 μmol L⁻¹ for OTC to 0.44 μmol L⁻¹ for DC. The possibility to carry out multiresidue analysis is demonstrated. The HPLC-ED/MWCNT-GCE method was applied to the analysis of fish farm pool water and underground well water samples spiked with the four TCs at 2.0 × 10⁻⁷ mol L⁻¹. Solid-phase extraction was accomplished for the preconcentration of the analytes and clean-up of the samples. Recoveries ranged from 87 ± 6 to 99 ± 3%. Under preconcentration conditions, limits of detection in the water samples were between 0.50 and 3.10 ng mL⁻¹.

Keywords: Tetracyclines; Water analysis; High-performance liquid chromatography; Electrochemical detection; Carbon nanotube modified electrode

Analysis, fate studies and monitoring of the antifungal agent clotrimazole in the aquatic environment by Manuela Peschka; Paul H. Roberts; Thomas P. Knepper (pp. 959-968).

The analysis and presence of clotrimazole, an antifungal agent with logK _OW > 4, was thoroughly studied in the aquatic environment. For that reason analytical methods based on gas chromatography–mass spectrometry and liquid chromatography–tandem mass spectrometry were developed and validated to quantify clotrimazole with limits of quantification down to 5 and 1 ng/L, respectively. Both methods were compared in an intercalibration exercise. The complete mass-spectrometric fragmentation pattern could be elucidated with the aid of quadrupole time of flight mass spectrometry. Since clotrimazole tends to adsorb to laboratory glassware, studies on its adsorption behaviour were made to ensure the appropriate handling of water samples, e.g. pH, storage time, pretreatment of sampling vessels or material of the vials used for final extracts. The phenomena of adsorption to suspended matter were investigated while analysing different waste-water samples. Application of the methods in various investigated wastewater and surface water samples demonstrated that clotrimazole could only be detected in the low nanogram per litre range of anthropogenic influenced unfiltered water samples after acidification to pH 2.

Keywords: Clotrimazole; Analysis; Adsorption; Environment; Mass spectrometry

Rapid fingerprinting of red wines by MALDI mass spectrometry by Andrea Carpentieri; Gennaro Marino; Angela Amoresano (pp. 969-982).

Here we report a simple and fast method for wine fingerprinting based on direct matrix-assisted laser desorption/ionization (MALDI) mass spectrometry analysis of different red wine samples, useful for batch-to-batch analysis and for the detection of key compounds even in trace amounts which may vary from vintage to vintage, and from one treatment to another one. A series of 20 samples from different wines were subjected to MALDI mass spectrometry. We found that 2,5-dihydroxybenzoic acid is far superior with respect to all the matrices tested To the best of our knowledge this is the first application of an effective wine profiling not limited to detection of anthocyanins. More than 80 molecular species were detected. Moreover, qualitative and quantitative differences were observed, owing to the nature and relative abundance of different chemical compounds among the wines.

Keywords: Matrix-assisted laser desorption/ionization mass spectrometry; Wine; Fingerprint

New unsymmetrical cyanine dyes for real-time thermal cycling by Ashraf I. Ahmad; Jahan B. Ghasemi (pp. 983-988).

Asymmetric cyanine dyes bind to the minor groove of double stranded DNA (dsDNA) owing to their crescent configuration; therefore, these dyes are widely used as a dsDNA probes. BOXTO-MEE is derived from BOXTO by adding the polar methoxyethoxyethyl tail in order to increase solubility, dissociation rate kinetics, and stability. As a result, BOXTO-MEE showed significant reduction in nonspecific amplification (primer dimers) without significant effect on target sequence amplification, PCR efficiency, and standard curve correlation coefficient. BETIBO is another example of an asymmetric cyanine dye that can binds to dsDNA but is less efficient than BOXTO-MEE for use in real-time PCR. Statistical analysis of reproducibility results shows that BETIBO is not strong enough to be used for quantifying low nucleic acid quantities. Statistical analysis for BOXTO-MEE results shows that there is no significant difference between the efficiency and correlation coefficient achieved by BOXTO-MEE and SYBR Green I, but a significant difference in the dynamic range is observed because BOXTO-MEE has a wider dynamic range. BOXTO-MEE stock solution was stable at −20 °C for more than 1 year and 40 μM solution was stable for 45 days (at least) at 4 °C.

Keywords: Asymmetric cyanine dyes; BOXTO-MEE; BETIBO; SYBR Green I; Quantitative real-time PCR

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Analytical and Bioanalytical Chemistry (v.389, #3)