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Archives of Microbiology (v.193, #2)

Arbuscular mycorrhizal fungi and nitrogen uptake by Mohammad Miransari (pp. 77-81).

Nitrogen (N) is among the most important macro-nutrients significantly affecting plant growth and yield production. Accordingly, N must be supplied adequately so that optimum amounts of yield are resulted. There are different ways of supplying N to the plant including the use of chemical and biological fertilization. The chemical properties of N make it very mobile, especially under humid conditions. Hence, N must not be overfertilized with respect to the economical and environmental points of view. N Biological fertilization includes the use of plant growth-promoting rhizobacteria (PGPR) including the N-fixing bacteria, rhizobium. There are also arbuscular mycorrhizal (AM) fungi in the soil, which are symbiotic to most terrestrial plants enhancing plant growth and yield production through increasing the uptake of water and nutrients by the host plant. Numerous experiments have indicated the important role of AM fungi in enhancing P uptake by plant. However, it is yet a matter of debate that how AM fungi may affect soil N dynamic and hence plant N uptake. Some of the most important and recent aspects regarding such effects by AM fungi are highlighted, which can be of significance to health and productivity of the ecosystem.

Keywords: AM fungi; Soil N dynamic; Plant N uptake; Tripartite symbiosis; Chemical and biological fertilization

Multiplex polymerase chain reaction method discriminating Escherichia coli and Shigella sp. by Y. Yamazaki; A. Fukasawa (pp. 83-87).

To distinguish between Escherichia coli and other bacteria that have similar biochemical characteristics, 3 polymerase chain reaction techniques were combined. The primer sets cydA-F2-A2 and cydA-R2-A2 were designed to amplify 605 base pairs of nucleotide sequence specific for the cydA gene of Escherichia coli; primer sets lacZ-F-A and lacZ-R-A to amplify 1,023 bp of nucleotide sequence specific for the lacZ gene of Escherichia coli; and primers lacA-F2-A2 and lacA-R2-A2 to amplify 325 bp of nucleotide sequence specific for the lacA gene of Escherichia coli. As a result, 3 nucleotide fragments were generated when 3 samples DNA from Escherichia coli were used as template. On the other hand, 1,023- and 605-bp products were obtained when DNA of Shigella sonnei was used, and a 605-bp product was obtained when DNA of Shigella flexneri was used. The specificity of the technique was confirmed by comparing it with the conventional culture test; the consistency rate of both tests was 0.749. These results suggest that the technique described in the present study will be useful for distinguishing Escherichia coli from Shigella species with accuracy and specificity.

Keywords: Escherichia coli ; Polymerase chain reaction; Shigella

An uncertain role for Cu(II) in stimulating Mn(II) oxidation by Leptothrix discophora SS-1 by Iman A. El Gheriany; Daniela Bocioaga; Anthony G. Hay; William C. Ghiorse; Michael L. Shuler; Leonard W. Lion (pp. 89-93).

In an effort to improve understanding of the role of Cu(II) in bacterial Mn(II) oxidation, a model Mn(II)-oxidizing bacterium, Leptothrix discophora SS-1, was grown in presence of toxic and non-toxic concentrations of Cu(II), Cd(II) and Mn(II). Mn(II)-oxidizing activity increased by 40% when cells were grown in the presence of 0.05 μM of Cu(II) and increased twofold at 0.18 μM Cu(II). Toxic levels of Cd(II) did not stimulate Mn(II) oxidizing activity, indicating that Mn(II) oxidation is not a response to metal toxicity. Stimulation by Cu(II) confirms the specific role of Cu(II) in Mn(II) oxidation. Comparison of transcript levels of the multicopper oxidase mofA gene in the presence and absence of added Cu(II) do not indicate a statistically significant change in mofA transcript levels in cultures supplemented with Cu(II). Thus, the exact role of Cu(II) in Mn(II) oxidation and its affect on mofA gene expression remain uncertain.

Keywords: Mn(II) oxidation; Leptothrix discophora ; Copper; Transcript; mofA

Identification and characterization of gerPI and gerPII involved in epoxidation and hydroxylation of dihydrochalcolactone in Streptomyces species KCTC 0041BP by Sailesh Malla; Ta Thi Thu Thuy; Tae Jin Oh; Jae Kyung Sohng (pp. 95-103).

The macrolide antibiotics are biosynthesized by initial assembly of a macrolactone ring, followed by a series of post-polyketide (PKS) modifications. In general, the additional hydroxyl or epoxy groups are installed by cytochrome P450 enzymes, improving the bioactivity profile through structural diversification of natural products. The biosynthetic gene cluster for the 16-membered macrolide antibiotic dihydrochalcomycin (DHC) has been cloned from Streptomyces sp. KCTC 0041BP. Three cytochrome P450 genes are found in the DHC biosynthetic gene (ger) cluster. Two P450 enzymes were characterized from this cluster. Disruption of gerPI accumulated predominantly 12,13-de-epoxydihydrochalcomycin while disruption of gerPII accumulated 8-dehydroxy-12,13-de-epoxydihydrochalcomycin; DHC production was abolished in both cases. The results suggest that GerPII P450 catalyzes hydroxylation at the C₈ position followed by an epoxidation reaction catalyzed by GerPI P450 at the C₁₂–C₁₃ position.

Keywords: Cytochrome P450; Dihydrochalcomycin; Epoxidation; Gene disruption; Hydroxylation; Streptomyces

Coastal bacterioplankton community diversity along a latitudinal gradient in Latin America by means of V6 tag pyrosequencing by Fabiano L. Thompson; Thiago Bruce; Alessandra Gonzalez; Alexander Cardoso; Maysa Clementino; Marcela Costagliola; Constanza Hozbor; Ernesto Otero; Claudia Piccini; Silvia Peressutti; Robert Schmieder; Robert Edwards; Mathew Smith; Luis Roberto Takiyama; Ricardo Vieira; Rodolfo Paranhos; Luis Felipe Artigas (pp. 105-114).

The bacterioplankton diversity of coastal waters along a latitudinal gradient between Puerto Rico and Argentina was analyzed using a total of 134,197 high-quality sequences from the V6 hypervariable region of the small-subunit ribosomal RNA gene (16S rRNA) (mean length of 60 nt). Most of the OTUs were identified into Proteobacteria, Bacteriodetes, Cyanobacteria, and Actinobacteria, corresponding to approx. 80% of the total number of sequences. The number of OTUs corresponding to species varied between 937 and 1946 in the seven locations. Proteobacteria appeared at high frequency in the seven locations. An enrichment of Cyanobacteria was observed in Puerto Rico, whereas an enrichment of Bacteroidetes was detected in the Argentinian shelf and Uruguayan coastal lagoons. The highest number of sequences of Actinobacteria and Acidobacteria were obtained in the Amazon estuary mouth. The rarefaction curves and Good coverage estimator for species diversity suggested a significant coverage, with values ranging between 92 and 97% for Good coverage. Conserved taxa corresponded to aprox. 52% of all sequences. This study suggests that human-contaminated environments may influence bacterioplankton diversity.

Keywords: Marine bacterial diversity; Latin America; V6 tag pyrosequencing

Colutea arborescens is nodulated by diverse rhizobia in Eastern Morocco by Mohammed Ourarhi; Hanaa Abdelmoumen; Kamal Guerrouj; Hanane Benata; Rosella Muresu; Andrea Squartini; Mustapha Missbah El Idrissi (pp. 115-124).

Eighteen isolates of rhizobia isolated from root nodules of Colutea arborescens (Bladder senna) grown in different soils of the eastern area of Morocco were characterized by phenotypic and genomic analyses. All the isolates characterized were fast growers. This is may be due to the isolation procedures used. The phenotypic, symbiotic and cultural characteristics analyzed allowed the description of a wide physiological diversity among tested isolates. The results obtained suggest that the phenotype of these rhizobia might have convergent evolved to adapt the local conditions. The genetic characterization consisted in an analysis of the rep-PCR fingerprints and the PCR-based RFLP of the 16S rDNA patterns. The 16S rDNA of six isolates representing the main ribotypes obtained by the PCR-based RFLP was sequenced. A large diversity was observed among these rhizobia, and they were classified as different species of the genera Rhizobium, Sinorhizobium and Mesorhizobium. The nodC gene was also sequenced, and the results confirmed the three lineages corresponding to the three genera. The results of the sequencing of nodC and 16S rDNA genes suggest that the nodulation genes and chromosome might have co-evolved among these bacteria.

Keywords: Colutea arborescens ; Bladder senna; Rhizobia; Phenotypic diversity; Genetic diversity

Desiccation tolerance in Staphylococcus aureus by Plykaeow Chaibenjawong; Simon J. Foster (pp. 125-135).

Staphylococcus aureus is a multidrug-resistant pathogen that not only causes a diverse array of human diseases, but also is able to survive in potentially dry and stressful environments, such as the human nose, on skin and on inanimate surfaces such as clothing and surfaces. This study investigated parameters governing desiccation tolerance of S. aureus and identified several components involved in the process. Initially, the role of environmental parameters such as temperature, growth phase, cell density, desiccation time and protectants in desiccation tolerance were determined. This established a robust model of desiccation tolerance in which S. aureus has the ability to survive on dry plastic surfaces for more than 1,097 days. Using a combination of a random screen and defined mutants, clpX, sigB and yjbH were identified as being required for desiccation tolerance. ClpX is a part of the ATP-dependent ClpXP protease, important for protein turnover, and YjbH has a proposed linked function. SigB is an accessory sigma factor with a role in generalized stress resistance. Understanding the molecular mechanisms that govern desiccation tolerance may determine the break points to be exploited to prevent the spread of this dangerous pathogen in hospitals and communities.

Keywords: Desiccation; Matric stress; Osmotic stress

Gluconacetobacter diazotrophicus levansucrase is involved in tolerance to NaCl, sucrose and desiccation, and in biofilm formation by M. Lourdes Velázquez-Hernández; Víctor M. Baizabal-Aguirre; Fermín Cruz-Vázquez; Mayra J. Trejo-Contreras; Luis E. Fuentes-Ramírez; Alejandro Bravo-Patiño; Marcos Cajero-Juárez; Martha P. Chávez-Moctezuma; Juan J. Valdez-Alarcón (pp. 137-149).

Gluconacetobacter diazotrophicus is a nitrogen-fixing bacterium and endophyte of sugarcane, which expresses levansucrase, a fructosyltransferase exoenzyme with sucrose hydrolytic and levan biosynthetic activities. As a result of their physical properties, the levan can provide protection against stress caused by abiotic or biotic factors and participate in the formation of biofilms. In this study, we investigated the construction and function of a levansucrase-defective mutant of G. diazotrophicus. The lsdA mutant showed a decreased tolerance (65.5%) to 50–150 mM NaCl and a decrease of 89% in 876 mM (30%) sucrose, a reduction (99%) in tolerance to desiccation after 18 h, and a decrease (36.9–58.5%) in the ability to form cell aggregates on abiotic surfaces. Complementation of the mutant with the complete lsdA gene leads to a recovery of the ability to grow on sucrose-containing medium and to form slimy colonies, the ability to form the cell aggregates on abiotic surfaces and the tolerance to NaCl. This report demonstrates the importance of levansucrase in environmental adaptation of G. diazotrophicus under high osmotic stress and in biofilm formation.

Keywords: Levansucrase; Osmotic stress; Biofilm; Diazotroph

Acetate-dependent photoheterotrophic growth and the differential requirement for the Calvin–Benson–Bassham reductive pentose phosphate cycle in Rhodobacter sphaeroides and Rhodopseudomonas palustris by Rick Laguna; F. Robert Tabita; Birgit E. Alber (pp. 151-154).

Rhodobacter sphaeroides ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-deletion strain 16 was capable of photoheterotrophic growth with acetate, while Rhodopseudomonas palustris RubisCO-deletion strain 2040 could not grow under these conditions. The reason for this difference lies in the fact that Rba. sphaeroides and Rps. palustris use different pathways for acetate assimilation, the ethylmalonyl-CoA pathway, and glyoxylate-bypass cycle, respectively. The ethylmalonyl-CoA pathway is distinct from the glyoxylate cycle as one molecule of CO₂ and one molecule of HCO₃ ⁻ per three molecules of acetyl-CoA are co-assimilated to form two malate molecules. The glyoxylate cycle directly converts two acetyl-CoA molecules to malate. Each pathway, therefore, also dictates at what point, CO₂ and reductant are consumed, thereby determining the requirement for the Calvin–Benson–Bassham reductive pentose phosphate cycle.

Keywords: RubisCO; Ethylmalonyl-CoA pathway; Glyoxylate cycle; Redox balance; Anaplerotic

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Archives of Microbiology (v.193, #2)

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Archives of Microbiology (v.193, #2)