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Archives of Microbiology (v.171, #3)

Selective transport of divalent cations by transition metal permeases: the Alcaligenes eutrophus HoxN and the Rhodococcus rhodochrous NhlF by Olaf Degen; Michihiko Kobayashi; Sakayu Shimizu; T. Eitinger (pp. 139-145).

nhlF and hoxN, the genes encoding a cobalt transporter of Rhodococcus rhodochrous J1 and a nickel permease of Alcaligenes eutrophus H16, respectively, were expressed in Escherichia coli. ⁵⁷Co²⁺ and ⁶³Ni²⁺ transport of the recombinants was examined by means of a previously described physiological assay. Although the transporters are highly similar, different preferences for divalent transition metal cations were observed. HoxN was unable to transport ⁵⁷Co²⁺, but mediated ⁶³Ni²⁺ uptake. The latter activity was unaffected by a tenfold excess of other divalent cations, showing the specificity of HoxN for Ni²⁺. In contrast, NhlF transported both ⁵⁷Co²⁺ and ⁶³Ni²⁺ ion. NhlF-mediated ⁶³Ni²⁺ uptake was markedly reduced in the presence of Co²⁺, while ⁵⁷Co²⁺ uptake was only slightly lower in the presence of Ni²⁺. These results indicate different affinities of NhlF for Co²⁺ and Ni²⁺ and identified Co²⁺ ion as the preferred substrate.

Keywords: Key wordsRhodococcus rhodochrous; Alcaligenes; eutrophus; Nickel transport; Cobalt transport; Ion; selectivity

Distribution of ATPase and ATP-to-ADP phosphate exchange activities in magnesium chelatase subunits of Chlorobium vibrioforme and Synechocystis PCC6803 by Bent L. Petersen; C. G. Kannangara; Knud W. Henningsen (pp. 146-150).

Insertion of magnesium into protoporphyrin IX is a complex ATP-dependent reaction catalysed by the enzyme Mg-chelatase. Three separate proteins (Mg-chelatase subunits), designated as D, H and I, are involved in the chelation reaction. The genes encoding the Mg-chelatase subunits of the green sulfur bacterium Chlorobium vibrioforme and of the cyanobacterium Synechocystis strain PCC6803 were expressed in Escherichia coli. The recombinant proteins were purified, tested for ATPase and phosphate exchange activities, and compared with the activities of the corresponding subunits of Rhodobacter sphaeroides. The Synechocystis strain PCC6803 I subunit and the C. vibrioforme H and I subunits hydrolysed ATP at the rates of 2.0, 1.8 and 0.16 nmol (mg protein)^–1 min^–1, respectively. The ATPase activity of the C. vibrioforme H subunit was similar to that reported for the R. sphaeroides H subunit. The Synechocystis strain PCC6803 H subunit failed to hydrolyse ATP. The I subunit of Synechocystis strain PCC6803 and C. vibrioforme catalysed a transfer of PO₄ from ATP to ADP (exchange activity) at the rate of 1.75 ± 0.15 nmol (mg protein)^–1 min^–1. This exchange rate was 300-fold lower than that reported for the R. sphaeroides I subunit. The PO₄ exchange activities were correlated with the presence of the sequence GXRGTGKSTXVRALA in the primary structure of the three I subunits. Mg-chelatase activity was reconstituted by combining the three subunits of the same bacterium [rates of 41–89 pmol Mg-deuteroporphyrin (mg protein)^–1 min^–1]. Heterologous subunit combinations resulted in low or no Mg-chelatase activity.

Keywords: Key wordsChlorobium vibrioforme; Synechocystis strain PCC6803; Magnesium protoporphyrin IX chelatase; ATPase; Phosphate exchange activity; Rhodobacter sphaeroides

Regulation of the synthesis of aryl metabolites by phospholipid sources in the white-rot fungus Bjerkandera adusta by Carmen Lapadatescu; Christian Giniès; Aleth Djian; Henry-Eric Spinnler; Jean-Luc Le Quéré; Pascal Bonnarme (pp. 151-158).

The white-rot basidiomycete Bjerkandera adusta was cultivated in a liquid medium enriched with l-phenylalanine and various phospholipid sources (lecithin, egg yolk and asolectin). Three aromatic metabolites (benzaldehyde, benzyl alcohol and benzoic acid) were produced under these culture conditions. High concentrations of benzaldehyde (404 mg l^–1) were obtained when the cultures were supplemented with 10 g lecithin l^–1. Benzyl alcohol production was promoted when the strain was grown with 5 or 10 g lecithin l^–1. In the absence of or with a low concentration of lecithin (2.5 g l^–1), benzoic acid was the major aryl metabolite synthesized. The results presented here indicate that aryl alcohol oxidase, an extracellular enzyme catalyzing the oxidation of benzyl alcohol into benzaldehyde, was maximally detected when significant amounts of benzaldehyde were produced. Aryl alcohol oxidase activity was significantly enhanced in the presence of elevated concentrations of phospholipid sources. Together with lignin peroxidase, methoxylated and hydroxylated aryl metabolites were also synthesized under these culture conditions. The possible involvement of phospholipids in the synthesis of aryl metabolites is discussed.

Keywords: Key words Benzaldehyde; Benzyl alcohol; Benzoic acid; Aryl metabolites; Bjerkandera adusta; Phospholipid sources; Fungal metabolism; Aryl alcohol oxidase

Cell wall of Thermoanaerobacterium thermosulfurigenes EM1: isolation of its components and attachment of the xylanase XynA by Elke Brechtel; Markus Matuschek; Andrea Hellberg; Eva Maria Egelseer; Roland Schmid; H. Bahl (pp. 159-165).

Thermoanaerobacterium thermosulfurigenes EM1 has a gram-positive type cell wall completely covered by a surface layer (S-layer) with hexagonal lattice symmetry. The components of the cell envelope were isolated, and the S-layer protein was purified and characterized. S-layer monomers assembled in vitro into sheets with the same hexagonal symmetry as in vivo. Monosaccharide analysis revealed that the S-layer is associated with fucose, rhamnose, mannosamine, glucosamine, galactose, and glucose. The N-terminal 31 amino acid residues of the S-layer protein showed significant similarity to SLH (S-layer homology) domains found in S-layer proteins of different bacteria and in the exocellular enzymes pullulanase, polygalacturonate hydrolase, and xylanase of T. thermosulfurigenes EM1. The xylanase from T. thermosulfurigenes EM1 was copurified with the S-layer protein during isolation of cell wall components. Since SLH domains of some structural proteins have been shown to anchor these proteins noncovalently to the cell envelope, we propose a common anchoring mechanism for the S-layer protein and exocellular enzymes via their SLH domains in the peptidoglycan-containing layer of T. thermosulfurigenes EM1.

Keywords: Key words S-layer; Thermophile; Exocellular; proteins; Cell surface

Glucose stimulates a decrease of the fatty acid saturation degree in Acinetobacter calcoaceticus by Claus Härtig; Norbert Loffhagen; W. Babel (pp. 166-172).

The fatty acid composition of Acinetobacter calcoaceticus 69-V was determined under various growth conditions. Saturated, unsaturated, and hydroxy fatty acids with chain lengths of 12–18 carbon atoms predominated in the fatty acid profile. With acetate or propanol as growth substrates, the ratio of saturated to unsaturated fatty acids varied with changes in the temperature. This was the only adaptive mechanism detected that compensated for the physical effects of temperature alterations on the cell membranes. The fatty acid composition of A. calcoaceticus grown at 40 °C had a saturation degree of approximately 50%; after growth at 20 °C it was approximately 35%. In the presence of a carbon and energy source, A. calcoaceticus was able to respond to temperature reductions under oxic conditions regardless of whether fatty acid biosynthesis was inhibited or not. This suggests an aerobic mechanism of fatty acid biosynthesis and the involvement of a fatty acid desaturase system. Addition of the non-growth substrate, glucose, helped the organism to adapt to lower temperature. The molecular mechanism of the aid is not really understood. The oxidation of glucose could provide the desaturase either with electrons directly via a pyrrolo-quinoline-quinone-linked glucose dehydrogenase or with NADH after fatty acid degradation has been initiated by ATP generated by the oxidation of glucose.

Keywords: Key words Fatty acids; Temperature adaptation; Acinetobacter calcoaceticus; Fatty acid desaturase

The cell wall porin of the gram-positive bacterium Nocardia asteroides forms cation-selective channels that exhibit asymmetric voltage dependence by Franziska G. Rieß; Thomas Lichtinger; Atteyet F. Yassin; Klaus P. Schaal; R. Benz (pp. 173-182).

Detergent-solubilized cell wall extracts of the gram-positive, strictly aerobic bacterium Nocardia asteroides contain channel-forming activity as judged from reconstitution experiments using lipid bilayer membranes. The cell wall porin was identified as a protein with an apparent molecular mass of about 84 kDa based on SDS-PAGE. The porin was purified to homogeneity using preparative SDS-PAGE. The 84-kDa protein was no longer observed after heating in SDS buffer. The presumed dissociation products were not observed on SDS-polyacrylamide gels. The cell wall porin increased the specific conductance of artificial lipid bilayer membranes from phosphatidylcholine/phosphatidylserine mixtures by the formation of cation-selective channels, which had an average single-channel conductance of 3.0 nS in 1 M KCl. The single-channel conductance was only moderately dependent on the bulk aqueous KCl concentration, which indicated negative point charge effects on the channel properties. The analysis of the concentration dependence of the single-channel conductance using the effect of negative charges on channel conductance suggested that the diameter of the cell wall channel is about 1.4 nm. Asymmetric addition of the cell wall porin to lipid bilayer membranes resulted in an asymmetric voltage dependence. The cell wall channel switched into substates, when the cis side of the membrane, the side of the addition of the protein, had negative polarity. Positive potentials at the cis side had no influence on the conductance of the cell wall channel.

Keywords: Key words Cell wall channel; Mycolic acid; Porin; Nocardia asteroides; Lipid bilayer membrane

Ferribacterium limneticum, gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments by David E. Cummings; Frank Caccavo Jr.; Stefan Spring; R. F. Rosenzweig (pp. 183-188).

A dissimilatory Fe(III)-reducing bacterium was isolated from mining-impacted lake sediments and designated strain CdA-1. The strain was isolated from a 4-month enrichment culture with acetate and Fe(III)-oxyhydroxide. Strain CdA-1 is a motile, obligately anaerobic rod, capable of coupling the oxidation of acetate and other organic acids to the reduction of ferric iron. Fe(III) reduction was not observed using methanol, ethanol, isopropanol, propionate, succinate, fumarate, H₂, citrate, glucose, or phenol as potential electron donors. With acetate as an electron donor, strain CdA-1 also grew by reducing nitrate or fumarate. Growth was not observed with acetate as electron donor and O₂, sulfoxyanions, nitrite, trimethylamine N-oxide, Mn(IV), As(V), or Se(VI) as potential terminal electron acceptors. Comparative 16 S rRNA gene sequence analyses show strain CdA-1 to be most closely related (93.6% sequence similarity) to Rhodocyclus tenuis. However, R. tenuis did not grow heterotrophically by Fe(III) reduction, nor did strain CdA-1 grow photrophically. We propose that strain CdA-1 represents a new genus and species, Ferribacterium limneticum. Strain CdA-1 represents the first dissimilatory Fe(III) reducer in the β subclass of Proteobacteria, as well as the first Fe(III) reducer isolated from mine wastes.

Keywords: Key wordsFerribacterium limneticum; Dissimilatory; iron reduction; Mine wastes; Lake Coeur d’Alene; Idaho

Diversity of chlorophenol-degrading bacteria isolated from contaminated boreal groundwater by Minna K. Männistö; Marja A. Tiirola; Mirja S. Salkinoja-Salonen; Markku S. Kulomaa; J. A. Puhakka (pp. 189-197).

Chlorophenol-degrading bacteria from a long-term polluted groundwater aquifer were characterized. All isolates degraded 2,4,6-trichlorophenol and 2,3,4,6-tetrachlorophenol at concentrations detected in the contaminated groundwater (< 10 mg l^–1). Pentachlorophenol was degraded by three isolates when present alone. In two gram-positive isolates, 2,3,4,6-tetrachlorophenol was required as an inducer for the degradation of pentachlorophenol. The gram-positive isolates were sensitive to pentachlorophenol, with an IC₅₀ value of 5 mg/l. Isolates belonging to the Cytophaga/Flexibacter/Bacteroides phylum had IC₅₀ values of 25 and 63 mg/l. Isolates belonging to α-, β- and γ-Proteobacteria generally tolerated the highest pentachlorophenol concentrations (> 100 mg/l). Polychlorophenol-degrading capacity was found in strains of Nocardioides, Pseudomonas, Ralstonia, Flavobacterium, and Caulobacter previously not known to degrade polychlorophenols. In addition, six polychlorophenol-degrading sphingomonads were found.

Keywords: Key words Bacterial diversity; Chlorophenol; degradation; Groundwater; Toxicity

Coregulation of the syntheses of bacteriochlorophyll and pigment-binding proteins in Rhodobacter capsulatus by Jörg Rödig; S. Jock; G. Klug (pp. 198-204).

We quantified the expression of the puf and puc operons, which encode pigment binding proteins, in a number of strains of Rhodobacter capsulatus that have defects in genes affecting different steps of bacteriochlorophyll biosynthesis. Our results show that these mutations have a very similar effect on puf and puc expression. This suggests that the reduced expression of genes encoding pigment-binding proteins is due neither to the accumulation of a specific intermediate of bacteriochlorophyll synthesis nor to the lack of an early intermediate, but is rather the result of the lack of a very late intermediate or the bacteriochlorophyll molecule itself.

Keywords: Key words Bacterial photosynthesis; Bacteriochlorophyll biosynthesis; Oxygen regulation; Transcriptional regulation

Cryptic luminescence in the cold-water fish pathogen Vibrio salmonicida by P. M. Fidopiastis; Henning Sørum; E. G. Ruby (pp. 205-209).

The recent discovery that the fish pathogen Vibrio salmonicida is closely related to the luminous bacteria Vibrio fischeri and Vibrio logei suggested that V. salmonicida might also be capable of bioluminescence. Interestingly, cells of V. salmonicida were found to produce light in culture, but only when exposed to either an aliphatic aldehyde and/or the major V. fischeri autoinducer N-(3-oxo-hexanoyl)-l-homoserine lactone, a transcriptional activator of the luminescence (lux) genes. An extract of spent medium of V. salmonicida that should contain any V. salmonicida acyl-homoserine lactone autoinducer, when added to V. fischeri cells, led to an induction of their luminescence. These results show that V. salmonicida is a newly recognized luminous bacterial species that apparently both produces an autoinducer activity and responds to exogenous V. fischeri autoinducer.

Keywords: Key wordsVibrio salmonicida; Luminescence; Luciferase; Autoinducer; Quorum sensing

Membrane-associated, dissimilatory nitrite reductase of the denitrifying fungus Cylindrocarpon tonkinense by Yuko Kubota; Naoki Takaya; H. Shoun (pp. 210-213).

Dissimilatory nitrite reductase (Nir) of the fungus Cylindrocarpon tonkinense was isolated and partially characterized. Nir activity was recovered in both the soluble and the membrane fractions, giving a specific activity of 4.74 and 5.80 μmol NO min^–1 (mg protein)^–1, respectively. The soluble and membrane-associated Nir preparations resembled each other in properties, and the results suggested that Nir is a homodimer of a 67-kDa subunit. The absorption spectrum and the inhibition by diethyldithiocarbamate indicated that fungal Nir is a copper-containing Nir (CuNir).

Keywords: Key words Nitrite reductase; Denitrification; Fungal denitrifier; Cylindrocarpon tonkinense; Fusarium; oxysporum

Isolation of salt-induced periplasmic proteins from Synechocystis sp. strain PCC 6803 by S. Fulda; Stefan Mikkat; Werner Schröder; Martin Hagemann (pp. 214-217).

Periplasmic proteins were obtained from control cells and salt-adapted cells of the cyanobacterium Synechocystis sp. PCC 6803 using the method of cold osmotic shock. Two of these proteins (PP 1, apparent mol. mass 27.6 kDa, and PP 3, apparent mol. mass 39.9 kDa) were accumulated in high amounts in the periplasm of salt-adapted cells, while the major periplasmic protein (PP 2, apparent mol. mass 36.0 kDa) was accumulated independently from salt. After isolation from gels and partial sequencing, the proteins could be assigned to proteins deduced from the complete genome sequence of Synechocystis. Neither salt-induced periplasmic proteins (PP 1, Slr0924 and PP 3, Slr1485) exhibited sequence similarity to proteins of known function from databases. The major protein (PP 2-Slr0513) showed significant sequence similarities to iron-binding proteins. All proteins included typical leader sequences at their N-terminus.

Keywords: Key words Cyanobacteria; Periplasmic proteins; Salt; adaptation; Synechocystis

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Archives of Microbiology (v.171, #3)