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Archives of Microbiology (v.167, #6)
Surface signaling: novel transcription initiation mechanism starting from the cell surface by V. Braun (pp. 325-331).
Transcription of the ferric citrate transport genes of Escherichia coli is induced by a novel mechanism. Ferric citrate, the inducer, does not have to enter the cytoplasm to initiate transcription. Interaction of ferric citrate with the outer membrane receptor protein FecA induces transcription of the fec transport gene operon consisting of the fecIRABCDE genes. A signal from FecA occupied with ferric citrate is transmitted across the outer membrane into the periplasm with the help of the electrochemical potential of the cytoplasmic membrane and the Ton system. The signal is then transduced across the cytoplasmic membrane by the FecR protein, which in turn activates the FecI σ-factor that directs the RNA polymerase core-enzyme to the fec transport gene promoter. The promoter of the regulatory genes fecI and fecR is not controlled by ferric citrate but is regulated by iron via the Fur repressor. It is proposed that the information flux from the cell surface to the cytoplasm involves a series of conformational changes of the proteins FecA, FecR, and FecI in that order. The level of the regulatory proteins FecI and FecR is adjusted to the intracellular iron concentration and determines the degree of the response of the cell to ferric citrate in the medium. Ferric citrate induces transcription of the fec transport genes under iron-limiting conditions. A regulatory device similar to the ferric citrate transport system exists in Pseudomonas putida WCS358. The synthesis of the outer membrane receptor PupB, involved in the transport of the ferric pseudobactins BN7 and BN8, is induced by the ferric siderophores and requires PupB and two proteins homologous to FecI and FecR.
Keywords: Key words Escherichia coli; Ferric citrate transport; system; Transcription initiation; Surface signaling; Iron; repression
Environmental and physiological factors affecting the succinate product ratio during carbohydrate fermentation by Actinobacillus sp. 130Z by M. J. Van der Werf; Michael V. Guettler; Mahendra K. Jain; J. Gregory Zeikus (pp. 332-342).
Actinobacillus sp. 130Z fermented glucose to the major products succinate, acetate, and formate. Ethanol was formed as a minor fermentation product. Under CO2-limiting conditions, less succinate and more ethanol were formed. The fermentation product ratio remained constant at pH values from 6.0 to 7.4. More succinate was produced when hydrogen was present in the gas phase. Actinobacillus sp. 130Z grew at the expense of fumarate and l-malate reduction, with hydrogen as an electron donor. Other substrates such as more-reduced carbohydrates (e.g., d-sorbitol) resulted in higher succinate and/or ethanol production. Actinobacillus sp. 130Z contained the key enzymes involved in the Embden-Meyerhof-Parnas and the pentose-phosphate pathways and contained high levels of phosphoenolpyruvate (PEP) carboxykinase, malate dehydrogenase, fumarase, fumarate reductase, pyruvate kinase, pyruvate formate-lyase, phosphotransacetylase, acetate kinase, malic enzyme, and oxaloacetate decarboxylase. The levels of PEP carboxykinase, malate dehydrogenase, and fumarase were significantly higher in Actinobacillus sp. 130Z than in Escherichia coli K-12 and accounted for the differences in succinate production. Key enzymes in end product formation in Actinobacillus sp. 130Z were regulated by the energy substrates.
Keywords: Key words Phosphoenolpyruvate; Metabolic fluxes; Fermentation; Carbon dioxide fixation; Fumarate; reduction; Succinate; Actinobacillus sp. 130Z; Escherichia coli
Quinones in chlorosomes of green sulfur bacteria and their role in the redox-dependent fluorescence studied in chlorosome-like bacteriochlorophyll c aggregates by N.-U. Frigaard; Shinichi Takaichi; Masamitsu Hirota; Keizo Shimada; Katsumi Matsuura (pp. 343-349).
The light-harvesting chlorosome antennae of anaerobic, photosynthetic green sulfur bacteria exhibit a highly redox-dependent fluorescence such that the fluorescence intensity decreases under oxidizing conditions. We found that chlorosomes from Chlorobium tepidum contain three isoprenoid quinone species (chlorobiumquinone, menaquinone-7, and an unidentified quinone that probably is a chlorobiumquinone derivative) at a total concentration of approximately 0.1 mol per mol bacteriochlorophyll c. Most of the cellular chlorobiumquinone was found in the chlorosomes and constituted about 70% of the total chlorosome quinone pool. When the quinones were added to artificial, chlorosome-like bacteriochlorophyll c aggregates in an aqueous solution, a high redox dependency of the fluorescence was observed. Chlorobiumquinones were most effective in this respect. A lesser redox dependency of the fluorescence was still observed in the absence of quinones, probably due to another unidentified redox-active component. These results suggest that quinones play a significant, but not exclusive role in controlling the fluorescence and in inhibiting energy transfer in chlorosomes under oxic conditions. Chlorosomes from Chloroflexus aurantiacus contained menaquinone in an amount similar to that of total quinone in Chlorobium tepdium chlorosomes, but did not contain chlorobiumquinones. This may explain the much lower redox-dependent fluorescence observed in Chloroflexus chlorosomes.
Keywords: Key words Chlorobiumquinone; Isoprenoid quinone; Chlorosome; Bacteriochlorophyll c; Fluorescence; Quenching; Energy transfer
β-Mannanolytic system of Aureobasidium pullulans by Lubomír Kremnický; Peter Biely (pp. 350-355).
A xylanolytic yeast strain Aureobasidium pullulans NRRL Y 2311-1, was found to produce all enzymes required for complete degradation of galactomannan and galactoglucomannan. The enzymes differed in function and cellular localization: endo-β-1,4-mannanase was secreted into the culture fluid, β-mannosidase was strictly intracellular, and α-galactosidase and β-glucosidase were found both extracellularly and intracellularly. Among these enzyme components, only extracellular β-mannanase and intracellular β-mannosidase were inducible. The production of β-mannanase and β-mannosidase was 10- to 100-fold higher in galactomannan medium than in medium with one of the other carbon sources. β-mannanase and β-mannosidase were coinduced in glucose-grown cells by galactomannan, galactoglucomannan, and β-1,4-manno-oligosaccharides. The natural inducer of extracellular β-mannanase and intracellular β-mannosidase appeared to be β-1,4-mannobiose. Synthesis of both enzymes was completely repressed by glucose, mannose, or galactose. The synthetic glycoside methyl β-d-mannopyranoside served as a nonmetabolizable inducer of both β-mannosidase and β-mannanase.
Keywords: Key words β-mannanase; β-mannosidase; α-galactosidase; β-glucosidase; Aureobasidium; pullulans; β-1; 4-Mannobiose; Methyl; β-d-mannopyranoside
Application of autolysin and deoxyribonuclease profiles generated by renaturing SDS-PAGE in the comparison of selected Proteobacteria by Colin Charnock (pp. 356-362).
SDS-PAGE of cell-free extracts in gels containing bacterial murein or DNA allowed, after enzyme renaturation and staining of nonhydrolysed substrate, the detection of multiple autolysin or deoxyribonuclease activities directly in the gel as zones of clearing. Enzyme profiles of Proteobacteria which are, or were at one time, classified in the genus Pseudomonas were compared. For each species, a relatively large number of autolysin and deoxyribonuclease activities were detected. The distribution, numbers and intensities of zones of clearing in the gel provided complex species-specific patterns. Extensive data from two fundamental, and presumably evolutionarily distinct classes of enzymes were thus generated for purposes of comparison. Neither analysis suggested that these bacteria could represent a single natural cluster of species, lending support to their present multigeneric status. Ethidium-bromide-stained gels could be subsequently stained with Coomassie blue. This allowed the mapping of many deoxyribonuclease activities to particular peptides in the cell-free extract. In addition, modification of the substrate or renaturation buffer enabled a preliminary characterisation of several deoxyribonucleases in terms of their stability, substrate specificity, and other parameters expected to affect enzyme activity. Individual deoxyribonucleases could be located and screened for desired properties without prior purification.
Keywords: Key words Proteobacteria; Renaturing SDS-PAGE; Autolysin; Deoxyribonuclease
Specificity of O-demethylation in extracts of the homoacetogenic Holophaga foetida and demethylation kinetics measured by a coupled photometric assay by Jan-Ulrich Kreft; B. Schink (pp. 363-368).
The kinetics and specificity of O-demethylation were studied in cell-free extracts of the strictly anaerobic, methanethiol- and dimethylsulfide-producing homoacetogen Holophaga foetida strain TMBS4 with methanethiol and tetrahydrofolate (H4folate) as methyl acceptors. Extracts of cells grown with 3,4,5-trimethoxybenzoate contained an enzyme system that demethylated various phenyl methyl ethers with at least one ortho-positioned hydroxyl or methoxyl group (the ortho system) and also contained a decarboxylase. Extracts of cells grown with 3,5-dihydroxyanisole contained an enzyme system with a novel specificity that demethylated only the meta-hydroxylated compounds 3,5-dihydroxyanisole and 3-hydroxyanisole (the meta system) and lacked a decarboxylase. H4folate-dependent demethylation produced CH3-H4folate. For a photometric in vitro assay of the meta system, the NADPH-consuming phloroglucinol reductase (PR) reaction was coupled to the phloroglucinol-yielding demethylation of 3,5-dihydroxyanisole. The kinetics of the indicator enzyme PR were studied. The cell extract had a high and stable specific PR activity. PR was inhibited by phloroglucinol (substrate inhibition) and the substrate analogue 3,5-dihydroxyanisole. Doubling the PR activity of the coupled enzyme assay by additions of a PR-enriched fraction had no effect, showing that the PR activity supplied by cell extract did not limit reaction rates. Demethylation activity of the meta system with either methyl acceptor increased with the square of the protein concentration. With H4folate, the in vivo activity could be attained. Kinetic parameters for the methyl acceptors were determined.
Keywords: Key words Anaerobic degradation; Methoxylated; aromatic compounds; Dimethylsulfide; Methyl; transfer; Ether cleavage; Phloroglucinol reductase
A sulfate-reducing bacterium from the oxic layer of a microbial mat from Solar Lake (Sinai), Desulfovibrio oxyclinae sp. nov. by Daniel Krekeler; Pavel Sigalevich; A. Teske; H. Cypionka; Yehuda Cohen (pp. 369-375).
In an investigation on the oxygen tolerance of sulfate-reducing bacteria, a strain was isolated from a 107-fold dilution of the upper 3-mm layer of a hypersaline cyanobacterial mat (transferred from Solar Lake, Sinai). The isolate, designated P1B, appeared to be well-adapted to the varying concentrations of oxygen and sulfide that occur in this environment. In the presence of oxygen strain P1B respired aerobically with the highest rates [260 nmol O2 min–1 (mg protein)–1] found so far among marine sulfate-reducing bacteria. Besides H2 and lactate, even sulfide or sulfite could be oxidized with oxygen. The sulfur compounds were completely oxidized to sulfate. Under anoxic conditions, it grew with sulfate, sulfite, or thiosulfate as the electron acceptor using H2, lactate, pyruvate, ethanol, propanol, or butanol as the electron donor. Furthermore, in the absence of electron donors the isolate grew by disproportionation of sulfite or thiosulfate to sulfate and sulfide. The highest respiration rates with oxygen were obtained with H2 at low oxygen concentrations. Aerobic growth of homogeneous suspensions was not obtained. Additions of 1% oxygen to the gas phase of a continuous culture resulted in the formation of cell clumps wherein the cells remained viable for at least 200 h. It is concluded that strain P1B is oxygen-tolerant but does not carry out sulfate reduction in the presence of oxygen under the conditions tested. Analysis of the 16S rDNA sequence indicated that strain P1B belongs to the genus Desulfovibrio, with Desulfovibrio halophilus as its closest relative. Based on physiological properties strain P1B could not be assigned to this species. Therefore, a new species, Desulfovibrio oxyclinae, is proposed.
Keywords: Key words Desulfovibrio; 16S rRNA; Cyanobacterial mat; Aerobic respiration; Oxygen-indifferent sulfate; reduction
Deletion of two downstream genes alters expression of the hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough by Richard G. Keon; Rongdian Fu; G. Voordouw (pp. 376-383).
The hmc operon of Desulfovibrio vulgaris subsp. vulgaris Hildenborough consists of six genes (hmcA to hmcF) that encode structural components of the high-molecular-mass cytochrome redox protein complex (the Hmc complex). Two genes (rrf1 and rrf2) encoding regulatory proteins are present downstream of hmcF. Expression of the hmc operon, monitored by incubating protein blots with HmcA-specific or HmcF-specific antibodies, was found to be highest when hydrogen was the sole electron donor for sulfate reduction. Use of lactate or pyruvate as electron donor reduced expression of the hmc operon. A mutant with a deletion of the rrf1 and rrf2 genes was generated with the sacB mutagenesis method. This mutant overexpressed the hmc operon approximately threefold. It grew more rapidly than the wild type when hydrogen was used as the electron donor for sulfate reduction, but more slowly than the wild type when lactate was used. The results indicate that a physiological function of the Hmc complex is in electron flow from hydrogen to sulfate. At least one redox carrier is shared competitively by the hydrogen and lactate oxidation pathways in D. vulgaris.
Enzymology of the degradation of (di)chlorobenzenes by Xanthobacter flavus 14p1 by Claudia Sommer; Helmut Görisch (pp. 384-391).
Xanthobacter flavus 14p1 used 1,4-dichlorobenzene as the sole source of carbon and energy but did not grow on other (chloro)aromatic compounds. 1,4-Dichlorobenzene was attacked by a chlorobenzene dioxygenase, and the intermediate chlorocatechol was metabolized by the modified ortho pathway. All enzymes necessary to convert 1,4-dichlorobenzene to 3-oxoadipate showed a low substrate specificity and also accepted the respective intermediates of chlorobenzene or 1,3-dichlorobenzene degradation. Of the three compounds chlorobenzene, 1,4-dichlorobenzene, and 1,3-dichlorobenzene, the latter was the most toxic for X. flavus 14p1. Furthermore, 1,3-dichlorobenzene did not induce chlorocatechol 1,2-dioxygenase activity of the organism. Chlorobenzene, however, induced chlorocatechol 1,2-dioxygenase, dienelactone hydrolase, and maleylacetate reductase activities. As demonstrated by chloride release, also chlorobenzene dioxygenase, chlorobenzene cis-dihydrodiol dehydrogenase, and chloromuconate cycloisomerase activities were present in chlorobenzene-induced cells, but chlorobenzene failed to support growth. Presumably a toxic compound was formed from one of the intermediates.
Keywords: Key words Xanthobacter flavus; Dichlorobenzene; Biodegradation; Modified ortho pathway; Toxicity; Chloromuconate cycloisomerase; Dienelactone; hydrolase; Maleylacetate reductase
Oxygen uptake kinetics of Pseudomonas chlororaphis grown in glucose- or glutamate-limited continuous cultures by P. L. E. Bodelier; Hendrikus J. Laanbroek (pp. 392-395).
Oxygen uptake and glucose and glutamate oxidation kinetics of the heterotrophic bacterium Pseudomonas chlororaphis grown in glucose- or glutamate-limited cultures under oxygen-saturating or oxygen-limiting conditions were determined. K m values for oxygen were 1.4– 5.6 μM. Only in the case of glucose were significantly lower K m values and enhanced specific oxygen affinity (V max/K m) per cell found under oxygen-limiting conditions. Both K m and specific affinity values for glucose and glutamate oxidation were apparently affected by oxygen concentration, although a statistically significant enhancement of the oxidation kinetics was found only for glutamate. The kinetic data found for P. chlororaphis support the conclusion that the outcome of competition for oxygen with Nitrosomonas europaea in the rhizosphere of oxygen-releasing macrophytes will primarily be determined by oxidation kinetics of the electron donor instead of the oxygen uptake kinetics of the respective organisms.
Keywords: Key words Oxygen kinetics; Km; Pseudomonas chlororaphis; Nitrosomonas europaea; Chemostat; Competition
A heterotrophic bacterium inhibits growth of several species of the genus Chlorobium by B. Nogales; Ricardo Guerrero; Isabel Esteve (pp. 396-399).
A gram-negative bacterium (designed as strain BF 9500) causing growth inhibition zones on cell lawns of the anoxygenic phototrophic bacterium Chlorobium limicola BF 8000 was isolated from Lake Cisó (Spain). Strain BF 9500, identified as Stenotrophomonas maltophilia, caused growth inhibition zones on cell lawns of several strains of C. limicola except C. limicola DSM 245. It also inhibited other Chlorobium species and several heterotrophic bacteria. However, it had no effect on the growth of the eleven strains of Chromatiaceae tested. Strain BF 9500 caused the lysis of C. limicola BF 8000, whose cells formed “ghosts”. To date, this is the first report of a bacterium causing the lysis of species of the genus Chlorobium.
Keywords: Key words Chlorobium; Stenotrophomonas; maltophilia; Lytic/inhibitory bacteria; Lake Cisó