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Applied Biochemistry and Biotechnology: Part A: Enzyme Engineering and Biotechnology (v.142, #2)

Expression of Recombinant Proteins in Pichia Pastoris by Pingzuo Li; Anukanth Anumanthan; Xiu-Gong Gao; Kuppusamy Ilangovan; Vincent V. Suzara; Nejat Düzgüneş; V. Renugopalakrishnan (pp. 105-124).

Pichia pastoris has been used extensively and successfully to express recombinant proteins. In this review, we summarize the elements required for expressing heterologous proteins, and discuss various factors in applying this system for protein expression. These elements include vectors, host strains, heterologous gene integration into the genome, secretion factors, and the glycosylation profile. In particular, we discuss and evaluate the recent progress in optimizing the fermentation process to improve the yield and stability of expressed proteins. Optimization can be achieved by controlling the medium composition, pH, temperature, and dissolved oxygen, as well as by methanol induction and feed mode.

Keywords: Pichia pastoris ; Protein expression; Methanol induction; Dissolved oxygen; Gene integration; Alcohol oxidase promoter; AOX1

Immobilization of Xylanase from Bacillus pumilus Strain MK001 and its Application in Production of Xylo-oligosaccharides by Mukesh Kapoor; Ramesh Chander Kuhad (pp. 125-138).

Xylanase from Bacillus pumilus strain MK001 was immobilized on different matrices following varied immobilization methods. Entrapment using gelatin (GE) (40.0%), physical adsorption on chitin (CH) (35.0%), ionic binding with Q-sepharose (Q-S) (45.0%), and covalent binding with HP-20 beads (42.0%) showed the maximum xylanase immobilization efficiency. The optimum pH of immobilized xylanase shifted up to 1.0 unit (pH 7.0) as compared to free enzyme (pH 6.0). The immobilized xylanase exhibited higher pH stability (up to 28.0%) in the alkaline pH range (7.0–10.0) as compared to free enzyme. Optimum temperature of immobilized xylanase was observed to be 8 °C higher (68.0 °C) than free enzyme (60.0 °C). The free xylanase retained 50.0% activity, whereas xylanase immobilized on HP-20, Q-S, CH, and GE retained 68.0, 64.0, 58.0, and 57.0% residual activity, respectively, after 3 h of incubation at 80.0 °C. The immobilized xylanase registered marginal increase and decrease in K _m and V _max values, respectively, as compared to free enzyme. The immobilized xylanase retained up to 70.0% of its initial hydrolysis activity after seven enzyme reaction cycles. The immobilized xylanase was found to produce higher levels of high-quality xylo-oligosaccharides from birchwood xylan, indicating its potential in the nutraceutical industry.

Keywords: Bacillus pumilus ; Immobilization; Xylanase; Xylo-oligosaccharides

Enhanced Expression and Primary Purification of Soluble HBD3 Fusion Protein in Escherichia coli by Lei Huang; Zhinan Xu; Zhixia Zhong; Li Peng; Haiqin Chen; Peilin Cen (pp. 139-147).

Human β-defensin-3(HBD3) is a low molecular weight cationic peptide with a broad antimicrobial spectrum. A recombinant Escherichia coli (pET32-smHBD3) was constructed to produce HBD3 fusion protein (TrxA-HBD3) before, but the productivity is relatively low. In the present work, the effects of different expression conditions were systematically investigated to improve the expression level of the fusion protein. With regard to the volumetric productivity, the optimal conditions were determined as follows: cultivation at 34 °C in MBL medium, induction at middle stage of the exponential growth phase with 0.4 mM isopropylthio-d-galactoside, and postinduction expression for 8 h. Under these conditions, the volumetric productivity of the fusion protein reached 2.55 g/L, i.e., 0.55 g mature HBD3/L, which was about 2.6 times of that obtained under the unoptimized conditions. And the target protein still maintained high solubility (≥97.9%) and accounted for 66% of the total soluble protein. A cationic exchange purification step was employed to obtain high-purity target protein (90%) with a recovery ratio of 78%. This soluble expression level of HBD3 fusion protein was the highest among all the reported literature and facilitated the development of high efficient purification of HBD3.

Keywords: Antimicrobial peptide; Human β-defensin-3; Optimization; Purification; Soluble expression

Significant Improvement of Serratia marcescens Lipase Fermentation, by Optimizing Medium, Induction, and Oxygen Supply by Zhang-De Long; Jian-He Xu; Jiang Pan (pp. 148-157).

Production of an extracellular lipase from Serratia marcescens ECU1010, which is an industrially important biocatalyst for the stereospecific synthesis of Diltiazem precusor, was carefully optimized in both shake flasks and a fermenter, using Tween-80 as the enzyme inducer. Dextrin and beef extract combined with ammonium sulfate were indicated to be the best carbon and nitrogen sources, respectively. With the increase of Tween-80 from 0 to 10 g l⁻¹, the lipase production was greatly enhanced from merely 250 U l⁻¹ to a maximum of 3,340 U l⁻¹, giving the highest lipase yield of ca 640 U g⁻¹ dry cell mass (DCW), although the maximum biomass (6.0 g DCW l⁻¹) was achieved at 15 g l⁻¹ of Tween-80. When the medium loading in shake flasks was reduced from 20 to 10% (v / v), the lipase production was significantly enhanced. The increase in shaking speed also resulted in an improvement of the lipase production, although the cell growth was slightly repressed, suggesting that the increase of dissolved oxygen (DO) concentration contributed to the enhancements of lipase yield. When the lipase fermentation was carried out in a 5-l fermenter, the lipase production reached a new maximum of 11,060 U l⁻¹ by simply raising the aeration rate from 0.5 to 1.0 vvm, while keeping the dissolved oxygen above 20% saturation via intermittent adjustment of the agitation speed (≥400 rpm), in the presence of a relatively low concentration (2 g l⁻¹) of Tween-80 to prevent a potential foaming problem, which is easy to occur in the intensively aerated fermenter.

Keywords: Lipase fermentation; Medium optimization; Serratia marcescens ; Tween-80; Dissolved oxygen; Oxygen transfer

Statistical Optimization for Succinic Acid Production from E. Coli in a Cost-Effective Medium by Lata Agarwal; Jasmine Isar; Kakoli Dutt; Rajendra K. Saxena (pp. 158-167).

Response surface methodology (RSM) was employed for optimization of medium components and cultural parameters in cost effective cane molasses based medium for attaining high yield of succinic acid. The important factors obtained by “one-variable-at-a-time-approach” (cane molasses, corn steep liquor, sodium carbonate, and inoculum density) were further optimized by RSM. The optimum values of the parameters obtained through RSM (cane molasses 12.5%, corn steep liquor 7.5%, and sodium carbonate 25 mM) led to almost double yield of succinic acid (15.2 g/l in 36 h) as against “one-variable-at-a-time-approach” (7.1 g/l in 36 h) in 500-ml anaerobic bottles containing 300-ml cane molasses based medium. Subsequently, in 10-l bioreactor succinic acid production from Escherichia coli was further improved to 26.2 g/l in 30 h under conditions optimized through RSM. This fermentation-derived succinic acid will definitely help in replacing existing environmentally hazardous and cost-intensive chemical methods for the production of succinic acid.

Keywords: Response surface methodology; Succinic acid; Cane molasses; Corn steep liquor; Escherichia coli

Sorption of Cu²⁺ and Zn²⁺ by Natural Biomaterial: Duck Feather by Chongling Yang; Litao Guan; Yaoming Zhao; Yurong Yan (pp. 168-178).

Feather fibers were modified by treatment with 5% tannic acid (TA) solution. Kinetics of the modification was investigated as a function of the reaction time. The maximum loading of TA on feather reached 8.3% after being treated by TA for 9 h. The adsorption of metal cations (Cu²⁺, Zn²⁺) by unmodified and TA-modified feather fibers was investigated as a function of fiber weight gain, temperature, and pH of the metal solution. The adsorption was enhanced at alkaline pH and ambient temperature and increased with the weight gain of TA. The maximum uptake of metal cations (Cu²⁺, 0.77 mmol/g; Zn²⁺, 0.95 mmol/g) was obtained by TA-modified feather at weight gain: 8.3%, pH 11, while at the acidic pH, the adsorption of metal cations by either unmodified or TA-modified feather was negligible. The influence of anions on the adsorption of metal cations was also studied. The uptake of Cu²⁺ from chloride was higher and faster than that from nitrate. Desorption of the metals was performed at acidic pH 2.5 for 48 h. The feather–TA–metal complexes exhibited higher stability for metal cations than the feather–metal complexes. All these experiments reveal that TA-modified feather fibers have good adsorption to metal cations and can be used as metal adsorbent in wastewater treatment.

Keywords: Feather fiber; Tannic acid; Metal adsorption; Desorption; Column

Purification and Characterization of a Hyperthermostable and High Maltogenic α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans by J. L. Uma Maheswar Rao; T. Satyanarayana (pp. 179-193).

The purified α-amylase of Geobacillus thermoleovorans had a molecular mass of 26 kDa with a pI of 5.4, and it was optimally active at 100 °C and pH 8.0. The T _1/2 of α-amylase at 100 °C increased from 3.6 to 5.6 h in the presence of cholic acid. The activation energy and temperature quotient (Q ₁₀) of the enzyme were 84.10 kJ/mol and 1.31, respectively. The activity of the enzyme was enhanced strongly by Co²⁺ and Fe²⁺; enhanced slightly by Ba²⁺, Mn²⁺, Ni²⁺, and Mg²⁺; inhibited strongly by Sn²⁺, Hg²⁺, and Pb²⁺, and inhibited slightly by EDTA, phenyl methyl sulfonyl fluoride, N-ethylmaleimide, and dithiothreitol. The enzyme activity was not affected by Ca²⁺ and ethylene glycol-bis (β-amino ethyl ether)-N,N,N,N-tetra acetic acid. Among different additives and detergents, polyethylene glycol 8000 and Tween 20, 40, and 80 stabilized the enzyme activity, whereas Triton X-100, glycerol, glycine, dextrin, and sodium dodecyl sulfate inhibited to a varied extent. α-Amylase exhibited activity on several starch substrates and their derivatives. The K _m and K _cat values (soluble starch) were 1.10 mg/ml and 5.9 × 10³ /min, respectively. The enzyme hydrolyzed raw starch of pearl millet (Pennisetum typhoides) efficiently.

Keywords: Extreme thermophile; G. thermoleovorans ; α-Amylase; Hyperthermostable; Starch saccharification

Purification and Application of a Lipase from Penicillium expansum PED-03 by Tang Lianghua; Xia Liming; Su Min; Guo Huaying (pp. 194-199).

An extracellular lipase was purified from the fermentation broth of Penicillium expansum PED-03 by DEAE-Sepharose chromatography, followed by sephacryl S-200 chromatography. The enzyme was purified 81.8-fold with 19.8% recovery and a specific activity of 85.94 U/mg. The molecular weight of the homogeneous enzyme was about 28 kDa, determined by sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis. The enzymatic resolution of racemic ibuprofen was carried out by the lipase from P. expansum PED-03, and the conversion reached 46% with excellent enantioselectivity(E > 200 ), which showed a good application potential in the production of optically pure ibuprofen.

Keywords: Lipase; Penicillium expansum ; Purification; Resolution; Ibuprofen

Cloning, Sequence Analysis and Three-dimensional Structure Prediction of DNA Pol I from Thermophilic Geobacillus sp. MKK Isolated from an Iranian Hot Spring by Mohammad Khalaj-Kondori; Majid Sadeghizadeh; Khosro Khajeh; Hossein Naderi-Manesh; Ali Mohammad Ahadi; Abdorahman Emamzadeh (pp. 200-208).

Molecular phylogenetic analysis of a novel thermophilic eubacterium isolated from an Iranian hot spring using 16S rDNA sequence showed that the new isolate belongs to genera Geobacillus. DNA pol I gene from this isolate was amplified, cloned, sequenced, and the three-dimensional (3D) structure of deduced amino acid sequence was predicted. Sequence analysis revealed the gene is 2,631 bp long, encodes a protein of 876 amino acids with a calculated molecular mass of 99 kDa, and belongs to family A DNA polymerases. Comparison of 3′–5′exonuclease domain of Klenow fragment (KF) with corresponding region of newly identified DNA pol I (MF), the large fragment of Bacillus stearothermophilus DNA pol I (BF) and Klentaq1, revealed not only deletions in three regions compared to KF, but that three of the four critical metal-binding residues in KF (Asp355, Glu357, Asp424, and Asp501) are altered in MF as well. Predicted 3D structure and sequence alignments between MF and BF showed that all critical residues in the polymerase active site are conserved.

Keywords: Molecular phylogenetic; Thermostable DNA pol I; Cloning; 3D structure prediction; Gsm pol I

Factors Affecting the Adsorption of Bacteriocins to Lactobacillus sakei and Enterococcus sp. by Johan Wilhelm von Mollendorff; Svetoslav Dimitrov Todorov; Leon Milner Theodore Dicks (pp. 209-220).

Bacteriocins bacJW3BZ and bacJW6BZ produced by Lactobacillus plantarum, and bacJW11BZ and bacJW15BZ produced by Lactobacillus fermentum, inhibit Gram-positive and Gram-negative bacteria. Treatment of Enterococcus sp. HKLHS and Lactobacillus sakei DSM 20017 with these bacteriocins deformed the cells and resulted in DNA and β-galactosidase leakage. The bacteriocins adsorbed to sensitive and resistant strains. Optimal adsorption of bacJW3BZ and bacJW6BZ to Enterococcus sp. HKLHS was recorded at pH 10.0, whereas adsorption of bacJW11BZ and bacJW15BZ was favored at pH 4.0–8.0 and 2.0–4.0, respectively. Adsorption to L. sakei DSM 20017 was less influenced by pH. Incubation temperature had a major influence on the adsorption of bacJW6BZ and bacJW11BZ to sensitive cells, with better results recorded below 30°C. Although variable results were recorded for bacJW3BZ and bacJW15BZ, optimal adsorption occurred between 37 and 60°C. Variable levels of adsorption were recorded in the presence of inorganic salts and solvents, and this seems to be species-specific. Maximal adsorption (100%) was recorded for bacJW3BZ and bacJW15BZ to L. sakei DSM 20017 in the presence of most inorganic salts and solvents tested. Maximal adsorption of bacJW6BZ to Enterococcus sp. HKLHS (50%) was recorded in the presence of Triton X-114 and little (17%) or no adsorption in the presence of other reagents.

Keywords: Bacteriocins JW3BZ; JW6BZ; JW11BZ; JW15BZ; Adsorption

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Applied Biochemistry and Biotechnology: Part A: Enzyme Engineering and Biotechnology (v.142, #2)

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Applied Biochemistry and Biotechnology: Part A: Enzyme Engineering and Biotechnology (v.142, #2)