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Applied Biochemistry and Microbiology (v.45, #6)
Hemoglobins: Diversity of structures and functions by O. V. Kosmachevskaya; A. F. Topunov (pp. 563-587).
This review briefs the modern concepts of the diversity of hemoglobin functions. The hemoglobins discovered in the representatives of all kingdoms of living nature are described. Specific structural features of various groups of these proteins, including flavohemoglobins and truncated hemoglobins, are discussed. The transport, catalytic, and sensory functions of these proteins are described as well as their roles in oxidative, nitrosative, and carbonyl stresses and the changes in their functions caused by modifications of the molecule. The issues of hemoglobin origin and evolution are discussed.
The influence of growth medium composition and physicochemical factors on biosurfactant production by the bacterium Bacillus licheniformis VKM B-511 by I. N. Gogotov; A. I. Miroshnikov (pp. 588-592).
The ability of Bacillus licheniformis strain VKM B-511 to grow and synthesize biosurfactants under both aerobic and anaerobic conditions has been demonstrated. Yields of biosurfactants, emulsion indices and surface tension were considerably higher in culture liquor and preparations derived from cultures grown anaerobically at a C/N ratio of 1: 24, pH 7.0, and temperature of 30°C. Biosurfactant production by B. lichenformis also depended on concentrations of NaCl and Na2S in the medium and on water characteristics, reaching 4.58 g/l for bacteria grown anaerobically on a medium containing anolyte fraction of water.
Microbial community in granules from a high-rate EGSB reactor by Y. -J. Sun; W. Xing; J. -P. Li; Y. -Q. Lu; J. -E. Zuo (pp. 593-598).
The spatial distribution, quantity and diversity of different microorganisms within anaerobic granular sludge from a lab-scale expanded granular sludge bed (EGSB) reactor operated at different organic loading rates were studied using florescent in situ hybridization (FISH), real time quantitative — polymerase chain reaction (RTQ-PCR) and denaturing gradient gel electrophoresis (DGGE) techniques. The results indicated that most Eubacteria were located in the outer layer of granule, while the Archaea which mainly were methanogens and more sensible to the environmental conditions were located in the inner layer of the granule. The quantity of Archaea was obviously less than that of Eubacteria in the granules, but increased with the increasing of organic loading rates of the reactor. As the organic loading rate of the reactor increased and the operating time elapsed, the Archaea community in the granules changed significantly. Seven typical DGGE bands were collected and sequenced, and found that the dominant species of Archaea in the granules operated in the last period were mainly Methanocorpusculum, Methanobacterium, Methanosaeta.
Sorption and microbial degradation of glyphosate in soil suspensions by T. V. Shushkova; G. K. Vasilieva; I. T. Ermakova; A. A. Leontievsky (pp. 599-603).
Sorption and microbial destruction of glyphosate, the active agent of the herbicide Ground Bio, in suspensions of sod-podzol and gray forest soils has been studied. According to the adsorptive values (3560 and 8200 mg/kg, respectively) and the Freundlich constants (Kf, 15.6 and 18.7, respectively), these soils had a relatively high sorption capacity as related to the herbicide. Sorbed glyphosate is represented by extractable and bound (non-extractable) fractions. After long-term incubation of sterile suspensions, the ratio of these fractions reached 2: 1 for sod-podzol soil and 1: 1 for gray forest soil. Inoculation of a native suspension of sod-podzol soil with cells of a selected strain-degrader Ochrobactum anthropi GPK 3 resulted in a 25.4% decrease in the total glyphosate content (dissolved and extractable), whereas in a noninoculated suspension, the loss did not exceed 5.5%. The potential for the use of a selected bacterial strain in the glyphosate destruction processes in soil systems is demonstrated for the first time.
The influence of colonizing methylobacteria on morphogenesis and resistance of sugar beet and white cabbage plants to Erwinia carotovora by S. V. Pigoleva; N. S. Zakharchenko; A. V. Pigolev; Yu. A. Trotsenko; Ya. I. Buryanov (pp. 604-609).
The influence of colonization of sugar beet (Beta vulgaris var. saccharifera (Alef) Krass) and white cabbage (Brassica oleracea var. capitata L.) plants by methylotrophic bacteria Methylovorus mays on the growth, rooting, and plant resistance to phytopathogen bacteria Erwinia carotovora was investigated. The colonization by methylobacteria led to their steady association with the plants which had increased growth speed, root formation and photosynthetic activity. The colonized plants had increased resistance to Erwinia carotovora phytopathogen and were better adapted to greenhouse conditions. The obtained results showed the perspectives for the practical implementation of methylobacteria in the ecologically clean microbiology substances used as the plant growth stimulators and for the plant protection from pathogens.
Pectin lyase from Aspergillus giganteus: Comparative study of productivity of submerged fermentation on citrus pectin and orange waste by D. B. Pedrolli; E. C. Carmona (pp. 610-616).
The aim of this study was to investigate some of the factors affecting pectin lyase (PL) production by an Aspergillus giganteus strain, and to characterize this pectinolytic activity excreted into the medium. The highest activities were obtained with orange waste, citrus pectin and galacturonic acid as carbon sources. The highest activity, using citrus pectin as carbon source, was obtained in 11-day-old standing cultures, but the highest specific activity was obtained in 6.5-day-old shaken cultures, at pH 6.5 and 35°C. Using orange waste as carbon source, the highest activity was observed in 8-day-old standing cultures, at pH 7.0 and 30°C. Optimal assay conditions were pH 8.5–9.0 and 50°C. The PL activity showed thermal stability, with half-lives of 30 and 27 min when incubated at 45 and 50°C, respectively. High stability was observed at room temperature from pH 6.0 to 10.0; more than 85% of enzyme activity was preserved in this pH range. Under optimum conditions, the highest pectin lyase activity in the medium was 470 U/ml, with orange waste as carbon source.
Dihydroxylation of dehydroepiandrosterone in positions 7α and 15α by mycelial fungi by T. G. Lobastova; S. A. Gulevskaya; G. V. Sukhodolskaya; M. V. Donova (pp. 617-622).
The ability of 485 fungal strains is studied for catalysis of the process of 7α, 15α-dihydroxylation of dehydroepiandrosterone (DHEA, 3β-hydroxy-5-androstene-17-one), a key intermediate of the synthesis of physiologically active compounds. The ability for the formation of 3β, 7α, 15α-trihydroxy-5-androstene-17-one (7α, 15α-diOH-DHEA) was found for the first time for representatives of 12 genera, eight families, and six orders of ascomycetes, eight genera, four families, and one order of zygomycetes, one genus, one family, and one order of basidiomycetes, and four genera of mitosporic fungi. The most active strains are found among genera Acremonium, Gibberella, Fusarium, and Nigrospora. In the process of transformation of DHEA (2 g/l) by strains of Fusarium oxysporum VKM F-1600 and Gibberella zeae BKM F-2600, the molar yield was 63 and 68%, respectively. Application of the revealed active strains of microorganisms opens prospects for the efficient production of key intermediates of synthesis of modern medical preparations.
Purification and characterization of milk-clotting enzymes from oyster mushroom (Pleurotus ostreatus (Fr.) Kumm) by G. V. Lebedeva; M. T. Proskuryakov (pp. 623-625).
Three enzymes with milk-clotting activity have been isolated from the fruiting bodies of Pleurotus ostreatus (Fr.) Kumm) by (NH4)2SO4 precipitation, gel chromatography on Sephadex G75, and ion exchange chromatography on carboxymethylcellulose (CMC). Isoelectric points of the enzymes, as determined by isoelectrofocusing, equaled 4.2, 6.7, and 8.8. Inhibition analysis showed that the enzymes with isoelectric points of 4.2 and 6.7 belong to the class of metal-dependent proteinases, while the enzyme with the isoelectric point of 8.8 belongs to the serine protease class.
Alkali-soluble polysaccharides of Laetiporus Sulphureus (Bull.: Fr.) Murr fruit bodies by D. N. Olennikov; S. V. Agafonova; G. B. Borovskii; T. A. Penzina; A. V. Rokhin (pp. 626-630).
Alkali-soluble polysaccharides have been extracted from Laetiporus Sulphureus (Bull.: Fr.) Murr fruit bodies with a yield of 42.7%. The structure of the dominant polymer (16.05% of fruit bodies’ mass), named latiglucan I, has been determined. It is linear β-1,3-glucan (molecular weight 1.8 × 105 Da, [α]D-17°).
Modified arabinogalactans from callus culture Silene vulgaris (M.) G. by E. A. Günter; Yu. S. Ovodov (pp. 631-637).
The cultivation of Silene vulgaris (M.) G. callus culture on the nutrient mediums contained carbohydrates, phytohormones, nitrogen, and phosphate has led to the modification of the arabinogalactan structure from the cell walls. It was noticed that a sucrose concentration increase in the cultivation medium led to an increase of the arabinogalactan fragment yield with a molecular weight more than 300 kDa and a decrease of the yield of fragments with molecular weight less than 300 kDa. The sucrose concentration increase in the nutrient medium entailed the increase of arabinose and galactose content in the fragment with the molecular weight more than 300 kDa and a decrease in the fragment with a molecular weight of 100–300 kDa. On the nutrient medium containing a mix of sucrose and arabinose, the yield of the fraction with a molecular weight more than 300 kDa and the amount of arabinose residues increased, and the yield of minor fragments and the content of arabinose and galactose residues, included in these, decreased. On the medium containing an increased concentration of 2,4-dichlorphenoxyacetic acid, the yield of high-molecular fragment and the content of arabinose residues are two times increased. The decreasing of the amount of arabinose and galactose residues in the fragment with a molecular weight more than 300 kDa was observed at a lack of nitrogen or phosphate in the nutrient medium.
The antioxidant characteristics of medicinal plant extracts from Western Siberia by G. V. Smirnova; G. I. Vysochina; N. G. Muzyka; Z. Yu. Samoilova; T. A. Kukushkina; O. N. Oktyabr’ski (pp. 638-641).
An antioxidant activity of the water-alcohol extracts of leaves of ten herbs from Western Siberia was studied. In vivo the capability of extracts to protect cells of Escherichia coli against the bacteriostatic action of H 2O2 and the influence of the extracts on the expression of the antioxidant gene katG coding catalase-hydroperoxidase I were investigated. In vitro the radical-binding activity with DPhPG· (1,1-diphenyl-2-picrylhydrazyl radical), the chelating capability with ferrozine, and total composition of flavonoids and tannins were determined. The extracts of Filipendula stepposa and Limonium gmelinii were characterized by the highest antioxidant activity. According to data, the test extracts could have an antioxidant effect on bacteria in different ways at once including the direct inhibition of ROS (reactive oxygen species), iron ion chelation and antioxidant gene induction.
Antioxidant properties of essential oils by T. A. Misharina; M. B. Terenina; N. I. Krikunova (pp. 642-647).
By the method of capillary gas-liquid chromatography, we studied the antioxidant properties and stability during the storage of hexane solutions of 14 individual essential oils from black and white pepper (Piper nigrum L.), cardamom (Elettaria cardamomum L.), nutmeg (Myristica fragrans Houtt.), mace (Myristica fragrans Houtt), juniper berry (Juniperus communis L.), fennel seed (Foeniculum vulgare Mill., var. dulce Thelling), caraway (Carvum carvi L.), dry cinnamon leaves (Cinnamomum zeylanicum Bl.), marjoram (Origanum majorana L.), laurel (Laurus nobilis L.), ginger (Zingiber officinale L.), garlic (Allium sativum L.), and clove bud (Caryophyllus aromaticus L.). We assessed the antioxidant properties by the oxidation of aliphatic aldehyde (trans-2-hexenal) into the corresponding carbonic acid. We established that essential oils of garlic, clove bud, ginger and leaves of cinnamon have the maximal efficiency of inhibiting hexenal oxidation (80!–93%), while black pepper oil has the minimal (49%). Antioxidant properties of essential oils with a high content of substituted phenols depended poorly on their concentrations in model systems. We studied the changes in the composition of essential oils during the storage of their hexane solutions for 40 days in light and compared it with the stability of essential oils stored for a year in darkness.
Enzymatic hydrolysis of keratin-containing stock for obtaining protein hydrolysates by N. L. Eremeev; I. V. Nikolaev; I. D. Keruchen’ko; E. V. Stepanova; A. D. Satrutdinov; S. V. Zinov’ev; D. Yu. Ismailova; V. P. Khotchenkov; N. V. Tsurikova; A. P. Sinitsyn; V. G. Volik; O. V. Koroleva (pp. 648-655).
Optimization of the process of enzymatic hydrolysis of keratin-containing stock aimed at obtaining hydrolysates of high biological value has been performed. The increasing of the stock/water weight ratio, the amount of the alkaline protease preparation from Acremonium chrysogenium added and the temperature of the reaction mixture resulted in an increase in the yield and antioxidant capacity of hydrolysis products. The molecular masses of soluble products obtained under optimal hydrolysis conditions ranged from 3.55 to 3.60 kDa. High antioxidant capacity, 100% bioavailability and a well-balanced amino acid composition was characteristic of the hydrolysis products.